PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G149300.1.p
Common NameSb08g019920, SORBIDRAFT_08g019920
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 362aa    MW: 41883.6 Da    PI: 7.9605
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G149300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.59.1e-17431231398
                           TT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                    B3  13 sgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                            +r+++p kfa+++ g+   + +++l+++s+ ++W + +  +k+++  ++ +GW++Fvka++L+e+D ++F+  g+s+f   v vf+
  Sobic.008G149300.1.p  43 AHRISIPEKFAKKFRGQ--ITEEVQLKSPSSaETWHISV--EKCDDVLFFISGWEDFVKAHELQENDLLLFTCCGKSSF--EVLVFE 123
                           478***********877..4458*****7776*******..******9999*********************9998999..666665 PP
2B340.54.8e-13254352199
                           EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                    B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                           f+ vl++++v ++ + l++p kfa++h  ++ +  +++l+   + ++W v + y +++++ + l+    +F ++ +L+egD+++F+l++
  Sobic.008G149300.1.p 254 FVAVLMKNHVQRRnNHLTIPIKFAADHL-VE-RAHDIILRRpNRKEKWLVSYYYsCRTRCFHNLR--LFKFMRESKLREGDICIFELMK 338
                           67788888888876889*******9994.43.44589999945559******6566666666666..*********************9 PP

                           S.SEE..EEEEE-S CS
                    B3  87 r.sefelvvkvfrk 99 
                           + ++ +++v+++rk
  Sobic.008G149300.1.p 339 DkRRVTMTVHAIRK 352
                           98999999999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.92E-2127127IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.26731125IPR003340B3 DNA binding domain
CDDcd100173.64E-1533122No hitNo description
Gene3DG3DSA:2.40.330.101.5E-1934127IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.3E-1134125IPR003340B3 DNA binding domain
PfamPF023627.7E-1444122IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-17246352IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-15247352IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-10252351No hitNo description
PfamPF023622.0E-11254352IPR003340B3 DNA binding domain
SMARTSM010194.1E-6254353IPR003340B3 DNA binding domain
PROSITE profilePS508639.178255353IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MPKLQQMVEK ACESCREWQE HYYWDHMDVS KIRFFRRMTG DFAHRISIPE KFAKKFRGQI  60
TEEVQLKSPS SAETWHISVE KCDDVLFFIS GWEDFVKAHE LQENDLLLFT CCGKSSFEVL  120
VFEASGCEKV SSLFDNGIGS DVCKQFNDIV GKHGEHHSVT VSDSEDAIAP SQLVGSPHNA  180
SPSKEQSGKA RPSEYESPKD SNFIVKHVAT GEEDSDDGYA KSNYYYSKFA NRLRDEEKEQ  240
IIGLASIRPN NPVFVAVLMK NHVQRRNNHL TIPIKFAADH LVERAHDIIL RRPNRKEKWL  300
VSYYYSCRTR CFHNLRLFKF MRESKLREGD ICIFELMKDK RRVTMTVHAI RKANDRFILV  360
G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G149300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321920.10.0B3 domain-containing protein LOC_Os12g40090
SwissprotQ2QMT21e-127Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLC5YQW40.0C5YQW4_SORBI; Uncharacterized protein
STRINGSb08g019920.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Representative plantOGRP6299819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-29B3 family protein