PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G145000.2.p
Common NameSb08g019530, SORBIDRAFT_08g019530
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 425aa    MW: 44502 Da    PI: 4.2601
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G145000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96e-1969118255
                   AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Sobic.008G145000.2.p  69 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 118
                           789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.07E-3068125No hitNo description
Gene3DG3DSA:3.30.730.103.1E-2769125IPR001471AP2/ERF domain
PROSITE profilePS5103219.55969126IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-1969126IPR016177DNA-binding domain
PfamPF008471.1E-1369118IPR001471AP2/ERF domain
SMARTSM003802.1E-3569132IPR001471AP2/ERF domain
PRINTSPR003676.4E-87081IPR001471AP2/ERF domain
PRINTSPR003676.4E-892108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MSMARKRKAS DDSAVDVDGN DDVLHSPPPL LASTDACAWA SSGGGGMAAA VAAAAAAAQQ  60
QQQQRGRKRF VGVRQRPSGR WVAEIKDTIQ KIRVWLGTFD TAEEAARAYD EAACLLRGAN  120
TRTNFWPRPS PASSVAVAAA AHPAPPPPTP TPTPAAASVS PTQAPALPSK VTNLLLLRLR  180
ARNNDQQQVL NAAPARQQEA TALLQGPLCA EPYSGGGEEC AFQVDDFLSY DCGSDENSSQ  240
EIDDEEEEEE EEEEEELDFQ FMDQQAASPA AGCEGGGLCS PFEVVAAELG GAVEAGGGEP  300
ATAVHELMMS RMDYERKISA SLYALSGVSE CLRMRLGAAA GGGHAVRDQL SGLREACRKK  360
QRQTVQREQE PSTETAEDVK PSREECSPGG GGGAPEATSS SSSEASDGDG DVLLWSSLDL  420
APIC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G145000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0671090.0BT067109.1 Zea mays full-length cDNA clone ZM_BFb0192O05 mRNA, complete cds.
GenBankJX4699200.0JX469920.1 Zea mays subsp. mays clone UT3176 AP2-EREBP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442409.20.0dehydration-responsive element-binding protein 2E
TrEMBLA0A1Z5R6M70.0A0A1Z5R6M7_SORBI; Uncharacterized protein
STRINGSb08g019530.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54823052
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-21related to AP2 11