PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.008G137500.1.p | ||||||||
Common Name | Sb08g018840, SORBIDRAFT_08g018840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB | ||||||||
Protein Properties | Length: 382aa MW: 43238.3 Da PI: 9.9973 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.1 | 2.3e-14 | 4 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd l +v+q+G++ W++++++m+ + R +k+c +rw +yl Sobic.008G137500.1.p 4 RQRWRPEEDAVLRAYVRQYGPREWHLVSQRMNvaLDRDAKSCLERWKNYL 53 89**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 35.2 | 2.9e-11 | 59 | 103 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ ++eE+ l +++ +++G++ Wk+Ia++++ gRt+k + +w + Sobic.008G137500.1.p 59 KGSLSEEEQRLVIRLQAKHGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103 57789*****************.*********.*****999999766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.82 | 1 | 53 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-11 | 3 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.97E-21 | 4 | 98 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.79E-7 | 6 | 53 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-19 | 6 | 60 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 2.9E-13 | 7 | 68 | No hit | No description |
PROSITE profile | PS51294 | 22.933 | 54 | 108 | IPR017930 | Myb domain |
SMART | SM00717 | 5.3E-10 | 58 | 106 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-15 | 61 | 102 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.95E-6 | 63 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008356 | Biological Process | asymmetric cell division | ||||
GO:0009615 | Biological Process | response to virus | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010338 | Biological Process | leaf formation | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045088 | Biological Process | regulation of innate immune response | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0000793 | Cellular Component | condensed chromosome | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MKERQRWRPE EDAVLRAYVR QYGPREWHLV SQRMNVALDR DAKSCLERWK NYLRPGIKKG 60 SLSEEEQRLV IRLQAKHGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQQRE LRDSRRPPPE 120 PSPDERGRYE WLLENFAEKL VGERPHQQVA AAAAPPTLLM ASPVLPPWLS PNAGATVGVA 180 QPPRPPSPSV TLSLASATVA PPAPAPWMPE RAAAEAAAAA YGFPSPPQQH GAPGGGVPPP 240 QPPPPHPGMA VVEGQALAEL AECCRELEEG QRAWAAHRRE AAWRLKRVEQ QLEMEREMRR 300 REVWEEFEAK MRTMRLEQAA AAERVERDHR EKVAELRRDA QLKEEKMAEQ WAAKHARVAK 360 FLDQIGCSSR SSWSSATEMN C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-14 | 7 | 101 | 7 | 98 | C-Myb DNA-Binding Domain |
1msf_C | 2e-14 | 7 | 101 | 7 | 98 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in lateral organ promordia. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:16243907}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:9655808}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.008G137500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679469 | 0.0 | HF679469.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB63 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002443396.1 | 0.0 | protein rough sheath 2 | ||||
Refseq | XP_021301460.1 | 0.0 | protein rough sheath 2 | ||||
Refseq | XP_021301461.1 | 0.0 | protein rough sheath 2 | ||||
Swissprot | Q9S7B2 | 0.0 | RS2_MAIZE; Protein rough sheath 2 | ||||
TrEMBL | C5YQ95 | 0.0 | C5YQ95_SORBI; Uncharacterized protein | ||||
STRING | Sb08g018840.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5190 | 36 | 54 | Representative plant | OGRP5096 | 14 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37630.1 | 4e-73 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.008G137500.1.p |
Entrez Gene | 8068109 |