PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G112200.1.p
Common NameSb08g016620, SORBIDRAFT_08g016620
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB
Protein Properties Length: 419aa    MW: 45137.2 Da    PI: 7.0426
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G112200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.5e-152673148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g W++eEde+lv +  + G g+W+ +ar  g+ R++k+c++rw +yl
  Sobic.008G112200.1.p 26 KGLWSPEEDERLVAYMLRSGQGSWSDVARNAGLQRCGKSCRLRWINYL 73
                          678*******************************************97 PP
2Myb_DNA-binding52.11.5e-1679122146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg+++++E+el+v +++ lG++ W+ Ia++++ gRt++++k++w++
  Sobic.008G112200.1.p  79 RGAFSPQEEELIVSLHAILGNR-WSQIAARLP-GRTDNEIKNFWNS 122
                           89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.7992173IPR017930Myb domain
SuperFamilySSF466892.62E-2824120IPR009057Homeodomain-like
SMARTSM007172.1E-102575IPR001005SANT/Myb domain
PfamPF002493.2E-132673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-222780IPR009057Homeodomain-like
CDDcd001679.84E-92973No hitNo description
PROSITE profilePS5129425.33974128IPR017930Myb domain
SMARTSM007179.6E-1678126IPR001005SANT/Myb domain
PfamPF002496.1E-1579122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2581129IPR009057Homeodomain-like
CDDcd001672.63E-1181121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MRKPECPAAA NSGNAGGAAA ATKLRKGLWS PEEDERLVAY MLRSGQGSWS DVARNAGLQR  60
CGKSCRLRWI NYLRPDLKRG AFSPQEEELI VSLHAILGNR WSQIAARLPG RTDNEIKNFW  120
NSTIKKRLKN TSATSSPAAT ECASPEPNNK VAAGSCPDLA GLDHQDGGHH HHHHLMTTTT  180
TGLWMVDSSS SCTSSTSPMH QRQPPPTTAI MAAAAVAATR SYGGLVPFPD QLRGVMADAS  240
PPGRFFHGHA APPFKHQVAA LHHGGFYGST PPHHHGMMAT MEGGGCFMRG EDMFVGVVPP  300
LLDPMSAAAQ EQEQGQQGLM ASSGSNNAKN NNNSNNTTET TTTTTLSNNE SNITENNTNT  360
KDNINTISQV NNGSNVAAVF WEGAHQQYMS RNVMHGEWDL EELMKDVSSL PFLDFQVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27241285108B-MYB
1h8a_C2e-272312824128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00599PBMTransfer from AT5G12870Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G112200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443268.10.0myb-related protein 330
TrEMBLC5YP750.0C5YP75_SORBI; Uncharacterized protein
STRINGSb08g016620.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98213545
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.12e-65myb domain protein 46