PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.008G094700.1.p | ||||||||
Common Name | Sb08g014060, SORBIDRAFT_08g014060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NAC | ||||||||
Protein Properties | Length: 268aa MW: 28695.2 Da PI: 10.0619 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 144.4 | 6.3e-45 | 11 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrF+Ptdeel+v+yL++++ +++l+ + i++v+i+ ++P+dL p +e+e yfF++++ ky +g+r+nrat +gyWkatgk Sobic.008G094700.1.p 11 LPPGFRFRPTDEELIVHYLRRRALASPLPPAVDIPDVRILAHDPSDLlP--PGFSEQERYFFTCKEAKYVKGRRANRATGAGYWKATGK 97 79*************************988556**************53..3447899******************************* PP NAM 89 dkevlsk.........kgelvglkktLvfykgrapkgektdWvmheyrl 128 +k+v ++ + lvg+k++Lvfy+g+ p+g+ktdWvmheyrl Sobic.008G094700.1.p 98 EKPVAVAvpatrggqgQAVLVGMKRSLVFYRGKPPTGSKTDWVMHEYRL 146 *****998998876544455***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-49 | 8 | 184 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.368 | 11 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-26 | 12 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MEVKDAAKPR LPPGFRFRPT DEELIVHYLR RRALASPLPP AVDIPDVRIL AHDPSDLLPP 60 GFSEQERYFF TCKEAKYVKG RRANRATGAG YWKATGKEKP VAVAVPATRG GQGQAVLVGM 120 KRSLVFYRGK PPTGSKTDWV MHEYRLAGAG LAPCRRATAQ QDGDGDAAVS RPAEGWVLCR 180 VFRKKKGSAA AARPGDRSDG DGDEGEEAGE SESAGAGGPG FIDFFARADA AGRRRRAASP 240 VVSSSCLTDA SPERQQGREQ ETTSRGA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-37 | 7 | 186 | 11 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.008G094700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002443168.1 | 0.0 | NAC domain-containing protein 83 | ||||
TrEMBL | C5YNL7 | 0.0 | C5YNL7_SORBI; Uncharacterized protein | ||||
STRING | Sb08g014060.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6317 | 32 | 54 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 3e-55 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.008G094700.1.p |
Entrez Gene | 8063245 |