PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G072800.4.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MIKC_MADS
Protein Properties Length: 177aa    MW: 20256.4 Da    PI: 10.3926
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G072800.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.83.7e-251058250
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                          +ien   r vtfskRr+g+lKKA ELSvLC+a+v viifsstgk++e +
  Sobic.008G072800.4.p 10 QIENPVHRRVTFSKRREGLLKKARELSVLCGADVGVIIFSSTGKVHELA 58
                          69********************************************965 PP
2K-box33.32.1e-12821691098
                 K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                           ++ +++  ++ ++ Lk+ei  Lq+ +R   G + e++ l  L+ Le+ Le    + Rs K++++ ++i+ l++ke+ l++en+ L++k+
  Sobic.008G072800.4.p  82 KNLQSQVKEHLVSLLKEEICLLQHGLR-STGGGAEDMRLDRLHALEKGLELWYYQTRSAKMQIMQQEIHFLRNKENILKSENEILQQKV 169
                           23333444455789**********965.578889*****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-33160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.217161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-28179IPR002100Transcription factor, MADS-box
CDDcd002658.00E-35378No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-24323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-231156IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.75785175IPR002487Transcription factor, K-box
PfamPF014864.9E-1385169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MVRGKVQMRQ IENPVHRRVT FSKRREGLLK KARELSVLCG ADVGVIIFSS TGKVHELATN  60
GNMQSLVERY QSITARDQME SKNLQSQVKE HLVSLLKEEI CLLQHGLRST GGGAEDMRLD  120
RLHALEKGLE LWYYQTRSAK MQIMQQEIHF LRNKENILKS ENEILQQKVI TSRKAS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedling roots. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G072800.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321641.11e-110MADS-box transcription factor 33
SwissprotQ2QW558e-83MAD33_ORYSJ; MADS-box transcription factor 33
TrEMBLA0A1Z5R5691e-125A0A1Z5R569_SORBI; Uncharacterized protein
STRINGPavir.Ca00337.1.p6e-88(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-49AGAMOUS-like 12