PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.008G072800.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 216aa MW: 24786.5 Da PI: 9.6176 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78.3 | 5.4e-25 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +ien r vtfskRr+g+lKKA ELSvLC+a+v viifsstgk++e + Sobic.008G072800.2.p 10 QIENPVHRRVTFSKRREGLLKKARELSVLCGADVGVIIFSSTGKVHELA 58 69********************************************965 PP | |||||||
2 | K-box | 31.7 | 6.5e-12 | 82 | 168 | 10 | 97 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 ++ +++ ++ ++ Lk+ei Lq+ +R G + e++ l L+ Le+ Le + Rs K++++ ++i+ l++ke+ l++en+ L++k Sobic.008G072800.2.p 82 KNLQSQVKEHLVSLLKEEICLLQHGLR-STGGGAEDMRLDRLHALEKGLELWYYQTRSAKMQIMQQEIHFLRNKENILKSENEILQQK 168 23333444455789**********965.578889****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-33 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.217 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.41E-28 | 1 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.80E-35 | 3 | 78 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-23 | 11 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 8.886 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.1E-12 | 85 | 168 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MVRGKVQMRQ IENPVHRRVT FSKRREGLLK KARELSVLCG ADVGVIIFSS TGKVHELATN 60 GNMQSLVERY QSITARDQME SKNLQSQVKE HLVSLLKEEI CLLQHGLRST GGGAEDMRLD 120 RLHALEKGLE LWYYQTRSAK MQIMQQEIHF LRNKENILKS ENEILQQKEG ILKAENKVLQ 180 QKVNEQNEFI NNCLAFSGSS YPMHYNINES SLFKI* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedling roots. {ECO:0000269|PubMed:14701936}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.008G072800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807982.1 | 1e-126 | MADS-box transcription factor 33-like isoform X1 | ||||
Swissprot | Q2QW55 | 3e-81 | MAD33_ORYSJ; MADS-box transcription factor 33 | ||||
TrEMBL | A0A1Z5R575 | 1e-156 | A0A1Z5R575_SORBI; Uncharacterized protein | ||||
STRING | Pavir.Ca00337.1.p | 2e-85 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 1e-48 | AGAMOUS-like 12 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.008G072800.2.p |