PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G071900.1.p
Common NameSb08g006350, SORBIDRAFT_08g006350
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NF-YC
Protein Properties Length: 406aa    MW: 45580.4 Da    PI: 5.0398
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G071900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC73.53.1e-23241243100
                 NF-YC   3 ksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                             fw ++   ie   df ++++P++ +kki+ a++   m++ ++P +++kace+f+ el+lrsw+ a++ +r  +  sdia+a+++ + 
  Sobic.008G071900.1.p  24 DEFWREKqeeIEAIDDFSKRAIPMTCLKKIICAEKGKMMMTFDTPSFVTKACEIFVQELSLRSWICANSHHRDIILDSDIAEAIASMES 112
                           57998765679999*************************************************************************** PP

                 NF-YC  89 fdflvdivprde 100
                           + fl d+  +++
  Sobic.008G071900.1.p 113 YVFLNDVLCKHQ 124
                           ******998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.29E-1238134IPR009072Histone-fold
PfamPF008081.3E-545107IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.3E-1546120IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDHPDNISTP QRMSMPSSEQ QMIDEFWREK QEEIEAIDDF SKRAIPMTCL KKIICAEKGK  60
MMMTFDTPSF VTKACEIFVQ ELSLRSWICA NSHHRDIILD SDIAEAIASM ESYVFLNDVL  120
CKHQAEHNSA HHPKSIKKSS HNRLTDQPQT SGHPRYNKYP MPQFISQSAR YPLFALPPPL  180
PPTNDYHVPL PLRFLPRGAC PLMATTITQT PVLGGTIHHL PNIPNEGYMS RTPSMDTYYV  240
ESASKNNVVS QDGDVTFHYP FVPPVAWKSL SIPPVANSNG PISTGIIELH HTKQLVAHMG  300
NTTHASHLNV THGRLDTEVI STTNLNGKNN EHINWDETDM ADDSLLMEFW EDVMMEEDRS  360
TLPDTTSSTV GIVPVPCDKP DPEGFDPESF LVDDIIFDES TNKEA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G071900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441981.10.0uncharacterized protein LOC8082814
RefseqXP_021301644.10.0uncharacterized protein LOC8082814
RefseqXP_021301645.10.0uncharacterized protein LOC8082814
TrEMBLC5YTK10.0C5YTK1_SORBI; Uncharacterized protein
STRINGSb08g006350.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91742145
Representative plantOGRP1164537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.17e-19nuclear factor Y, subunit C1