PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G071200.1.p
Common NameSb08g006300, SORBIDRAFT_08g006300
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARR-B
Protein Properties Length: 552aa    MW: 60852.2 Da    PI: 5.903
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G071200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.91.7e-26192245155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           k+r++W  +LH++Fveav+q+ G+++A Pk+il +m+v+gLt+e+v+SHLQkYR+
  Sobic.008G071200.1.p 192 KQRVQWCGQLHQKFVEAVSQI-GIDRAAPKKILAIMNVEGLTRENVASHLQKYRI 245
                           79*******************.********************************7 PP
2Response_reg77.64.4e-26121211108
                           EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH....ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS
          Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd....pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 
                           vl vdD+++ +++l++ l+  +y ++++++d++ al++l+e++    +Dl++ D+ mp+mdG++ll+ i  e  +lp+i+++a++e ++
  Sobic.008G071200.1.p  12 VLAVDDDRVCLKILERQLKYCNY-NATVVSDARTALDMLRERKegnqFDLVISDVIMPNMDGFKLLELIGLEM-DLPVIMLSANSETQT 98 
                           799********************.***************99989999**********************6644.8************** PP

                           HHHHHHTTESEEEESS--HHHHH CS
          Response_reg  86 alealkaGakdflsKpfdpeelv 108
                           + + +k Ga d+ +Kp+  e+l+
  Sobic.008G071200.1.p  99 IMKGIKHGACDYMVKPVRLEQLR 121
                           ********************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.2E-339131IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.4E-389149No hitNo description
SMARTSM004483.0E-3010124IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.81411128IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.6E-2312121IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.19E-2713121No hitNo description
Gene3DG3DSA:1.10.10.601.6E-27189250IPR009057Homeodomain-like
PROSITE profilePS512949.88189248IPR017930Myb domain
SuperFamilySSF466893.23E-17190249IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-23192245IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MDADTFPAGL RVLAVDDDRV CLKILERQLK YCNYNATVVS DARTALDMLR ERKEGNQFDL  60
VISDVIMPNM DGFKLLELIG LEMDLPVIML SANSETQTIM KGIKHGACDY MVKPVRLEQL  120
RGIWTHVVKN SMNDPQNNIN SGSDDDVQKL RYGNGDKGMK DGANHRNKYS KKNKKVVDVA  180
DEDSENTSAQ KKQRVQWCGQ LHQKFVEAVS QIGIDRAAPK KILAIMNVEG LTRENVASHL  240
QKYRIYLRKL GDGKLRNSNP FADETEALRG NMYGPTFIGS PRSRNHSLPR SCSSYASILR  300
GKILGSSRGI PYEDIANGDI LAPSGHLPLQ SPELVKQPSV QLQSCSAGQF NEVAREVHQF  360
AGPSNSWKAD VPSRFSDLGH DVGKPEDPTQ DNIFKINQLS RLAHSSGQVP TFGNEYQKKI  420
TGIMGKDVPV EQVAPFSFGN NTHSTLTPNG NSALAISSST RPDLQIDNSA MLTQVLNGGG  480
ASDNHHDGST INHQAVSDQL NNINEFLMGT SEAQNVESDD LDDFLASLVN QDFINNDDSL  540
IDRDWEFAPL L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-20188250163ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G071200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443012.20.0two-component response regulator ORR24
TrEMBLA0A1Z5R6B60.0A0A1Z5R6B6_SORBI; Two-component response regulator
STRINGSb08g006300.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1872246
Representative plantOGRP1239536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.14e-86response regulator 12