PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.008G069200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 173aa MW: 20011.4 Da PI: 9.6999 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 35.9 | 9.5e-12 | 76 | 122 | 3 | 47 |
--SHHHHHHHHHHHHHHHHHHHH.HH.HHHHT-EEEEEEE-TTSEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAe.EL.SvLCdaevaviifsstgkly 47 +en++ +tf+ Rrng+lKKA+ EL vLC a va+i++ s+ +++ Sobic.008G069200.1.p 76 VENNTSWPITFCMRRNGLLKKAYdELfAVLCYAVVALIVVFSSRRVR 122 68999999**************856659********99976655554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.96E-10 | 65 | 124 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.647 | 65 | 128 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.9E-10 | 65 | 127 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.6E-9 | 76 | 121 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MSSALSSSIC YAVVALIVVF SSRGRLYERV RQQQVMSSPV EWTSFQTVGI SFLLWWLLSA 60 EIFNMGRGRI ENKRVVENNT SWPITFCMRR NGLLKKAYDE LFAVLCYAVV ALIVVFSSRR 120 VRLYERVRQQ VMSSPMNWMS FRTLLVGYFL VWSILPVESV ISDWEFYCGK ET* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.008G069200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002442984.2 | 1e-118 | uncharacterized protein LOC8082802 | ||||
TrEMBL | A0A1Z5R542 | 1e-120 | A0A1Z5R542_SORBI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.2 | 8e-17 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.008G069200.1.p |