PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G060300.1.p
Common NameSb08g005080, SORBIDRAFT_08g005080
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 335aa    MW: 35556.1 Da    PI: 4.9771
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G060300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.72.8e-24111171259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dg++WrKYGqKe+++s++p++Y+rCt++   +C ++++v+r ++dp++ ++tY g H+++
  Sobic.008G060300.1.p 111 EDGHSWRKYGQKEIQNSKYPKAYFRCTHKydqQCVAQRQVQRRDDDPDTYTVTYIGMHTCR 171
                           8***************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-24100173IPR003657WRKY domain
PROSITE profilePS5081120.369105173IPR003657WRKY domain
SuperFamilySSF1182905.89E-24106173IPR003657WRKY domain
SMARTSM007744.6E-33110172IPR003657WRKY domain
PfamPF031063.7E-22111171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAAAAPYARV MEDMVKGREY ATQLQALLRD SPEAGRLLDR ILHAMSRTID TAKAAAAEEE  60
EASEVQSDVT CAGTAGSSKR KAAGGGDKRA SCRKRGQQGS SVVTKNIKDL EDGHSWRKYG  120
QKEIQNSKYP KAYFRCTHKY DQQCVAQRQV QRRDDDPDTY TVTYIGMHTC RDPATAVASL  180
VVHAAGVTGD DLHHHAGSRL ISFAAANNNA SAATTSTTTT GNTTNQQLAV LQPLKLECGG  240
GGEQEEVLSS LTPAGSSAAA EAMRNGNAAA AAATTTGPEP DQGDVTSGLQ LQQFYGAGDD  300
LAYMARFSYD DTFDLEDIVV FGAPDSITDI YADE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-33100171169OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.113440.0shoot
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G060300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441930.10.0probable WRKY transcription factor 70
TrEMBLC5YT650.0C5YT65_SORBI; Uncharacterized protein
STRINGSb08g005080.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76563549
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-18WRKY DNA-binding protein 70