PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G051700.1.p
Common NameSb08g004370, SORBIDRAFT_08g004370
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GATA
Protein Properties Length: 548aa    MW: 58612.1 Da    PI: 9.0964
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G051700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA37.33.9e-12118149131
                  GATA   1 CsnCgttkTplWRrgp.dgnktLCnaCGlyyr 31 
                           C+ Cg+t+Tp+WR +p d    LCnaCG++ r
  Sobic.008G051700.1.p 118 CVICGATETPMWRTWPtDWRVVLCNACGIRVR 149
                           999*************777777*******988 PP
2GATA51.61.3e-16292326135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C +Cgtt+T +WR gp g++tLCnaCG++yr  +l
  Sobic.008G051700.1.p 292 CLHCGTTSTLQWRIGPAGESTLCNACGVRYRQGRL 326
                           99*****************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.76E-10110156No hitNo description
SMARTSM004019.3E-7112164IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.857112156IPR000679Zinc finger, GATA-type
CDDcd002026.49E-7117149No hitNo description
Gene3DG3DSA:3.30.50.101.4E-10118150IPR013088Zinc finger, NHR/GATA-type
PfamPF003208.5E-9118149IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.831286322IPR000679Zinc finger, GATA-type
SMARTSM004015.1E-13286336IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-13289345No hitNo description
Gene3DG3DSA:3.30.50.104.9E-12291324IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.27E-14292340No hitNo description
PfamPF003204.1E-14292326IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MREQERHSLT PATTRTASDE PPLLGLGGPV TGGSVATMAT GDDMAGGGGA GKEKRGPEGA  60
PNKLSVAFQF QRKQRSHVVR RAAPSHRWGS MLGPVLPPAP AKKKARKKKT AKKRDMPCVI  120
CGATETPMWR TWPTDWRVVL CNACGIRVRE PGAVLPELIY LSPPATATTT VISELERPVE  180
IQPVSNSTRA PLPKQVHVHL PPPTTTATTT TVISAPQEIQ ASESSPDSLI LDSMSDIDLN  240
LLKKTSASPR REKSTVSTPP PPPPLTVEVE PAPAAAAPPA PGNKKDTPEK WCLHCGTTST  300
LQWRIGPAGE STLCNACGVR YRQGRLVPEY RPRASPTFNQ SEHSYKHRDV LKLRKKQDHP  360
APPAAYKPIR PSRKPKADKA QKNQAGQAQP GSAQAATTQQ QRAGNDMVQN LPPPPPALPH  420
AGGDMEMEHR LLFLPPVLAQ AGDEIMAEQD LLPPPPPELP HPADDILDPM AAHHLPPPQA  480
QPHAGGELMM DEALPPPDPF LFDGPAAPMI IEDDEPVLKP TVEALSSWCG GGAKKHTHIA  540
VATGPKK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G051700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662514.27e-88formin-like protein 20
TrEMBLA0A1B6PBN10.0A0A1B6PBN1_SORBI; Uncharacterized protein
STRINGSb08g004370.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4161223
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.13e-25GATA transcription factor 12