PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G051500.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GATA
Protein Properties Length: 397aa    MW: 42754.9 Da    PI: 9.6238
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G051500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA39.95.8e-13142174132
                  GATA   1 CsnCgttkTplWRrgp.dgnktLCnaCGlyyrk 32 
                           C+ Cg+tkTplWR +p d   +LCn+CG++ r 
  Sobic.008G051500.1.p 142 CAICGATKTPLWRTWPtDRRVMLCNSCGIRVRA 174
                           999*************888888*******9986 PP
2GATA45.31.2e-14306340135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C +Cg t+T  WR gp g++tLCnaCG++yr  +l
  Sobic.008G051500.1.p 306 CLHCGITSTLRWRTGPAGESTLCNACGVRYRQGRL 340
                           99*****************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.9E-10133181No hitNo description
Gene3DG3DSA:3.30.50.109.8E-11135178IPR013088Zinc finger, NHR/GATA-type
SMARTSM004011.2E-7136188IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.108136180IPR000679Zinc finger, GATA-type
CDDcd002028.76E-8141180No hitNo description
PfamPF003201.6E-9142174IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.752300336IPR000679Zinc finger, GATA-type
SMARTSM004014.1E-12300350IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.0E-12302354No hitNo description
Gene3DG3DSA:3.30.50.102.1E-11305338IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.7E-12306340IPR000679Zinc finger, GATA-type
CDDcd002021.11E-11306354No hitNo description
PROSITE patternPS003440306331IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MAMQEQERRS PPLETAKSAS DEPQLPGLVP ITGGGGSAAT MATGDMAAGG GGAGKEERGL  60
EVPLDNVRSS SPSVAPLSVV GGSKPCSSHI FSSPQSPHFQ RKPRSHVHRA APPSHQWGFK  120
LPVLPPAPAK KKRAAKKRDK PCAICGATKT PLWRTWPTDR RVMLCNSCGI RVRAPGTVLP  180
ELVYLPHPAT ATTTVVSELE QPVAPAQEIQ PILDSLRPAV LPEKVHVHLP PPATARTTVI  240
SDLEQQPPPQ EIQDPESPPE PDSPILDSMK DVNNLPPPPP PAEPVPAAAA AAAPGNDEIN  300
KPEKWCLHCG ITSTLRWRTG PAGESTLCNA CGVRYRQGRL VPEYRPRASP TFNESEHAYK  360
HHEVLEIRKK QEYPAPPASF KLMKRRRKGA KGQQQPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1367387RKKQEYPAPPASFKLMKRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G051500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662514.29e-81formin-like protein 20
TrEMBLA0A1B6PBM50.0A0A1B6PBM5_SORBI; Uncharacterized protein (Fragment)
STRINGSb08g004360.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4161223
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-24GATA transcription factor 12