PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G051400.2.p
Common NameSb08g004340, SORBIDRAFT_08g004340
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GATA
Protein Properties Length: 467aa    MW: 49925.9 Da    PI: 10.6536
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G051400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.11.4e-14149180132
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                           C +Cg+  Tp+WR+gp g+ tLCnaCG++ + 
  Sobic.008G051400.2.p 149 CLQCGAAVTPQWRSGPMGQGTLCNACGVRLKA 180
                           89**************************9986 PP
2GATA52.37.5e-17291325135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C +Cg+++Tp+WR+gp g +tLCnaCG++yr  +l
  Sobic.008G051400.2.p 291 CLHCGSSSTPQWREGPLGRSTLCNACGVRYRQGRL 325
                           99*****************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.231143198IPR000679Zinc finger, GATA-type
SMARTSM004014.5E-11143200IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-12144194No hitNo description
Gene3DG3DSA:3.30.50.101.7E-12147185IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.5E-12149180IPR000679Zinc finger, GATA-type
PROSITE patternPS003440149174IPR000679Zinc finger, GATA-type
CDDcd002027.95E-10149185No hitNo description
PROSITE profilePS5011412.651285321IPR000679Zinc finger, GATA-type
SMARTSM004016.7E-14285335IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.71E-13286344No hitNo description
Gene3DG3DSA:3.30.50.101.4E-13289323IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.87E-14290346No hitNo description
PfamPF003201.3E-14291325IPR000679Zinc finger, GATA-type
PROSITE patternPS003440291316IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MAMADEGDKG EPPGLDPRTR RSAAAMATGD MAGGGGGEGE SEGGPGYVLS LPAAWLPLPV  60
AVSCLDATVR RKARSRLRLR AQPSGWWAFK LPVVPAPEEA KRPVPPASAV NNPTEAARPQ  120
RLRVRQAPVP DPYTPAAVEE RPAKRARLCL QCGAAVTPQW RSGPMGQGTL CNACGVRLKA  180
AGALRGQVQR RPTPATARTP ARPPPPDSPV SESSPDSPIW EPGSVPDVYL VRKKPLKRGK  240
PPPRPRTEPA PAPAPAPAVY LVKKKKKKKK AAASADSSRK PWRPRKSAKQ CLHCGSSSTP  300
QWREGPLGRS TLCNACGVRY RQGRLLPEYR PIASPTFEPS EHANRHSQVL QLHRHRKSQS  360
QSQSHHQQHP LPVEHHPPRA MDVLQFPPQR WHVKEEYPPT PVHQPLSLAG GVGGLMVDAA  420
ADADAGQGGD RGKGSDLNNA PSSLDSLLLE GPSAPLLVDG DQPLID*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263269KKKKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.215350.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G051400.2.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441888.20.0serine/arginine repetitive matrix protein 1 isoform X2
TrEMBLA0A1Z5R5Z90.0A0A1Z5R5Z9_SORBI; Uncharacterized protein
STRINGSb08g004340.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51080.15e-25GATA transcription factor 6