PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G050600.2.p
Common NameSb08g004260, SORBIDRAFT_08g004260
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 342aa    MW: 35520 Da    PI: 6.238
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G050600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.84.2e-21123172255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae+Aa+a++aa+++++g
  Sobic.008G050600.2.p 123 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEDAARAYDAAALRFRG 172
                           8********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.33E-21122182No hitNo description
PROSITE profilePS5103225.791123180IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-23123182IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-33123182IPR001471AP2/ERF domain
PfamPF008472.9E-14123172IPR001471AP2/ERF domain
SMARTSM003801.7E-37123186IPR001471AP2/ERF domain
PRINTSPR003674.7E-12124135IPR001471AP2/ERF domain
PRINTSPR003674.7E-12146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSAMVAALAK VVAGSAPPAA AEEPALAQED ASMDEAWWPY EDLHVAEPSS PARFVLHGYG  60
ATEPSEQYWP AAAATYSHSQ SQHGAASAAT DDELPSPTSA VGGSTSTSTS SRARAAAPVR  120
NKRYRGVRQR PWGKWAAEIR DPHKAARVWL GTFDTAEDAA RAYDAAALRF RGSRAKLNFP  180
ESATLPFSTP PPPATATHHH QQQPPLTPAS RALTTTPPPL ARPEALLESQ ALPAGGGSRD  240
PYLDYARFLQ SGGDGGGGDP SASSGTPAPS VTLPPPPAVP ASAAAAYGFG GEGETLRGYG  300
YLSPPPQRQS SAEPGNHPPA AWAGFYSSSY PPPPWPWDQS G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-24120180263ATERF1
3gcc_A3e-24120180263ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G050600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071257e-75AK107125.1 Oryza sativa Japonica Group cDNA clone:002-124-B10, full insert sequence.
GenBankAL7139027e-75AL713902.2 Oryza sativa chromosome 12, . BAC OJ1494_F10 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL8448747e-75AL844874.1 Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149687e-75AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126207e-75CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
GenBankCU4063557e-75CU406355.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109D06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442881.10.0ethylene-responsive transcription factor ABI4
TrEMBLA0A1Z5R4U80.0A0A1Z5R4U8_SORBI; Uncharacterized protein
STRINGSb08g004260.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.12e-24related to AP2 6