PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G043000.1.p
Common NameSb08g003700, SORBIDRAFT_08g003700
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NF-YC
Protein Properties Length: 465aa    MW: 51949.7 Da    PI: 4.7246
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G043000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC70.82.1e-2223121297
                 NF-YC   2 lksfwekqiek...atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 
                           +k fw ++ ek    ++f ++++P++ +kk++ a+ d  m+++++P++l+kace+f+ el++ +w+ a + +r+ +  sdia+++++ +
  Sobic.008G043000.1.p  23 IKEFWRNKQEKivaIENFGERTIPVTCLKKVICAEMDKMMMTSDTPTFLTKACEIFVQELSVHAWVCASSHNRSMILDSDIAEVIASIE 111
                           699**999666211578999********************************************************************* PP

                 NF-YC  88 ifdflvdivp 97 
                            +dfl d+  
  Sobic.008G043000.1.p 112 SYDFLNDVLR 121
                           *******865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001258.2E-729106IPR007125Histone H2A/H2B/H3
Gene3DG3DSA:1.10.20.104.7E-1746120IPR009072Histone-fold
SuperFamilySSF471136.92E-1458121IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MDHPTNIRTS PRAPLSLFEQ QMIKEFWRNK QEKIVAIENF GERTIPVTCL KKVICAEMDK  60
MMMTSDTPTF LTKACEIFVQ ELSVHAWVCA SSHNRSMILD SDIAEVIASI ESYDFLNDVL  120
RTHFEKYKSD PCLQSTKRPY HHMLTSQSST SLESSFHQYE MTQFIPQSTR YNPFLRIPPP  180
LPPTNAKLVH LPSLPHPPQK PCSKMANPIT PTPIVCGSFP PMTYMTKDLG FFRECISNNN  240
VALDLMTPQQ LLPEALPPIP NNCYMSTIAS TDTYCVGSAS NSNLIAQDGD MAFHFSHVSL  300
KHFQLSSSST MDNIACPIYI NVAELNHTES DVTHIGNSTH GTSSEATFNV TDGQQKHMGD  360
ETTASHHMNV VHGELDSEVV TTTNVDADDN NTNWDEIEMA SDSMLMEFWK DVMMEEDPTP  420
LPVTISPNDL IVLPSDMLEV EGCCHDSYLL DGIMSDTSTN GRHS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G043000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445118.10.0uncharacterized protein LOC8069654
TrEMBLC5YS680.0C5YS68_SORBI; Uncharacterized protein
STRINGSb08g003700.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91742145
Representative plantOGRP1164537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-17nuclear factor Y, subunit C2