PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G029400.1.p
Common NameSb08g002590, SORBIDRAFT_08g002590
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 226aa    MW: 25197.8 Da    PI: 8.901
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G029400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY711.6e-2242103259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                           dDg++WrKYG K+  +s+fpr YYrCt++   +Cp++k+v+++ ++dp ++ +tY ++H+++
  Sobic.008G029400.1.p  42 DDGHQWRKYGEKKLSNSNFPRFYYRCTYKndmKCPATKQVQQKdTSDPPLFSVTYFNHHTCS 103
                           8***************************99999*******876157**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.9E-2431104IPR003657WRKY domain
SuperFamilySSF1182908.37E-2333103IPR003657WRKY domain
PROSITE profilePS5081115.92736105IPR003657WRKY domain
SMARTSM007741.4E-3341104IPR003657WRKY domain
PfamPF031064.4E-2542102IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MALESVPTYL SDLGSHQAAR AQQQRIRKDE RIWTSDTYAP YDDGHQWRKY GEKKLSNSNF  60
PRFYYRCTYK NDMKCPATKQ VQQKDTSDPP LFSVTYFNHH TCSSISNPIG STRDVAAQSA  120
SSKAVSICFS PHYSFRDEPQ SPIAHSFRGN QQPAERSAYA TSQFQWTAAS SPSPTSNDSP  180
VKMEVDTFSG ASASSSSSSS MGSLPRTRTL LPIGQSRCIE YFHFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-1642102968OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.55021e-54pollen| root| shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G029400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586291e-119KU058629.1 UNVERIFIED: Panicum miliaceum WRKY20-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302115.11e-168probable WRKY transcription factor 46
RefseqXP_021302116.11e-168probable WRKY transcription factor 46
TrEMBLA0A1B6PAY61e-166A0A1B6PAY6_SORBI; Uncharacterized protein
STRINGSb08g002590.11e-150(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.16e-21WRKY DNA-binding protein 46