PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G012700.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GRAS
Protein Properties Length: 451aa    MW: 50339.7 Da    PI: 7.2063
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G012700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS309.39.1e-95144272374
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsP 89 
                           v +L++cA++vs+g+  +++  L++++ l+s  + p+qRl + ++  La+rl+ s+++l  +l +ps+  e++s    +a+  f  +sP
  Sobic.008G012700.1.p  14 VPALYQCATHVSEGSIGKTNDSLSEIKRLSSIVDGPLQRLSQIMADSLARRLLFSCEGLTGSLiHPSDYFEQSS--IQSARYNFASLSP 100
                           668*******************************************************9988856666654333..3345556****** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                           +l+ ++ t N+aIlea+e e+ v iiD++  +s++ QW+ Ll+ +  Rp+gpp++R+T+v++    +++ l +++  L+k A+ l++pf
  Sobic.008G012700.1.p 101 YLNTGFATINRAILEAMEVEKVVRIIDLScsASHPRQWLKLLHGFHGRPGGPPEVRLTVVHD----DNDFLANMRALLSKEADMLKIPF 185
                           ****************************7325799***************************....9********************** PP

                  GRAS 177 efnvlvakrledleleeL....rvkpgEalaVnlvlqlhrll..........................................desvs 219
                           +fn  v  rle+l++++L     +k gEa+a++++lqlhrll                                           +++ 
  Sobic.008G012700.1.p 186 QFND-VNGRLETLDFSNLrsvlGIKYGEAIAISCSLQLHRLLvvddnascsaidqlqkmanaaqlkqmassvyspasilnyprtPSPL- 272
                           ****.799*******99944445566*************************************************9999865333333. PP

                  GRAS 220 leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaer 305
                                 ++L+++ +l+P+++ v+eq+a+hn+  F +rf+eal+yy+alfds++a ++++s   +er+ vEr++lg+ei+n++ ceg +r
  Sobic.008G012700.1.p 273 ---LLASFLNAIHTLKPNIMLVMEQDANHNALLFSDRFVEALNYYAALFDSFNAMAATNSqraNERAQVERMILGEEIKNILLCEGVNR 358
                           ...4567*********************************************999888888889************************* PP

                  GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                            erhetl++W + ++++GF+ vpls  a  + +l l  ++ +g + + es++l+lgW++ +L+s+SaWr
  Sobic.008G012700.1.p 359 HERHETLSQWAMYMDTSGFHHVPLSFGAIREGELKLMSFGLNGCQYQVESDCLLLGWSSTRLYSISAWR 427
                           ********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.3241407IPR005202Transcription factor GRAS
PfamPF035143.1E-9214427IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MMCMPSVRDQ VRLVPALYQC ATHVSEGSIG KTNDSLSEIK RLSSIVDGPL QRLSQIMADS  60
LARRLLFSCE GLTGSLIHPS DYFEQSSIQS ARYNFASLSP YLNTGFATIN RAILEAMEVE  120
KVVRIIDLSC SASHPRQWLK LLHGFHGRPG GPPEVRLTVV HDDNDFLANM RALLSKEADM  180
LKIPFQFNDV NGRLETLDFS NLRSVLGIKY GEAIAISCSL QLHRLLVVDD NASCSAIDQL  240
QKMANAAQLK QMASSVYSPA SILNYPRTPS PLLLASFLNA IHTLKPNIML VMEQDANHNA  300
LLFSDRFVEA LNYYAALFDS FNAMAATNSQ RANERAQVER MILGEEIKNI LLCEGVNRHE  360
RHETLSQWAM YMDTSGFHHV PLSFGAIREG ELKLMSFGLN GCQYQVESDC LLLGWSSTRL  420
YSISAWRPKK GSTSGSREHM LVQRQVWPHN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-411942925381Protein SCARECROW
5b3h_A6e-411942924380Protein SCARECROW
5b3h_D6e-411942924380Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G012700.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021301260.10.0scarecrow-like protein 3
TrEMBLC5YQI60.0C5YQI6_SORBI; Uncharacterized protein
STRINGSb08g001190.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Representative plantOGRP1616933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-89scarecrow-like 3