PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.008G005000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | LBD | ||||||||
Protein Properties | Length: 209aa MW: 22310.3 Da PI: 7.2604 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.8 | 2.3e-40 | 22 | 116 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +Ca+Ck+lrr+C+++Cv+apyfp e+p+kfa+vhk+FGasnv+k+l++ r da+sslvyeA+ar+rdPvyG+vg i+ lqqq++q Sobic.008G005000.1.p 22 PCASCKLLRRRCTQECVFAPYFPPEDPHKFAIVHKVFGASNVSKMLQQ-----RADAVSSLVYEANARMRDPVYGCVGAISYLQQQVSQ 105 7*********************************************98.....************************************ PP DUF260 90 lkaelallkee 100 l+++lal+k+e Sobic.008G005000.1.p 106 LQVQLALAKAE 116 *******9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.922 | 21 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.5E-39 | 22 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MAGSGSGSGS GSSSSSSSSS PPCASCKLLR RRCTQECVFA PYFPPEDPHK FAIVHKVFGA 60 SNVSKMLQQR ADAVSSLVYE ANARMRDPVY GCVGAISYLQ QQVSQLQVQL ALAKAEILCV 120 QMQHDESASA AAAPAPAKQQ LHHHHHQQEE MECEAYGSLL VQNGLMMNTL NSTGAVHHQQ 180 QMLGSFGSAG NTAMMLQEAC LKKETLWA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-43 | 12 | 118 | 1 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-43 | 12 | 118 | 1 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.008G005000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP100852 | 2e-77 | FP100852.1 Phyllostachys edulis cDNA clone: bphyst013p01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002441669.2 | 1e-108 | LOB domain-containing protein 12 | ||||
Swissprot | Q8LBW3 | 4e-62 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A1B6PAP6 | 1e-151 | A0A1B6PAP6_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G025989_P01 | 1e-103 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 7e-52 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.008G005000.1.p |
Publications ? help Back to Top | |||
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