PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.008G004200.1.p | ||||||||
Common Name | Sb08g000510, SORBIDRAFT_08g000510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | G2-like | ||||||||
Protein Properties | Length: 367aa MW: 40268.3 Da PI: 6.9677 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.8 | 7.9e-31 | 82 | 135 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +F++av++LGG+++AtPk +l+lm+vkgL++ hvkSHLQ+YR+ Sobic.008G004200.1.p 82 PRLRWTPELHLCFLRAVDRLGGQDRATPKLVLQLMNVKGLSIGHVKSHLQMYRS 135 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.915 | 78 | 138 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-29 | 78 | 136 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.63E-15 | 79 | 136 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.5E-23 | 81 | 137 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.8E-9 | 83 | 134 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MEKDSSKGFD DESSADHQVL PSVGDGEGDD AGGADDVPRA GHDGSSSNSS TVELDEAGGD 60 SGRKAAGASP SSVRPYVRSK NPRLRWTPEL HLCFLRAVDR LGGQDRATPK LVLQLMNVKG 120 LSIGHVKSHL QMYRSKKIDD SGQVVGNTGS WRDLHHQLHD GGQAYNFGHL SLHHGQTGAS 180 TILSARFGAW PHWNNFHDPS YLLHSRHLLG SKPYYSSTSE ADAFLRTRAQ YTARATSSTP 240 ACTLQRCLTY QNDQFIMNHH QRRLLHNEDN IHHDPLDLEL ALDIGPSRDK RIKRSLGCSW 300 GRHQEEENVE NQEVESATDD TQLSLSLLPS PSSVRTSSGG HHKVLGLNME KGTTHPTRTS 360 TLDLTI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-17 | 83 | 137 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-17 | 83 | 137 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-17 | 83 | 137 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-17 | 83 | 137 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00301 | DAP | Transfer from AT2G40260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.008G004200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068440 | 1e-125 | BT068440.1 Zea mays full-length cDNA clone ZM_BFb0191O11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021321607.1 | 0.0 | uncharacterized protein LOC8064764 | ||||
TrEMBL | C5YQ15 | 0.0 | C5YQ15_SORBI; Uncharacterized protein | ||||
STRING | Sb08g000510.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4408 | 36 | 71 | Representative plant | OGRP285 | 15 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40260.1 | 2e-38 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.008G004200.1.p |
Entrez Gene | 8064764 |