PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G224200.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 376aa    MW: 39864.7 Da    PI: 6.6546
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G224200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.2e-09186233455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                            h+ +Er RR++i +++  L++l+P +     +K   Ka +L + ++Y++sLq
  Sobic.007G224200.3.p 186 RHSLAERLRREKISERMKLLQDLVPGC-----TKvTGKAVMLDEIINYVQSLQ 233
                           599***********************9.....78899***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.03E-17179249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.73E-11180237No hitNo description
PROSITE profilePS5088815.243182232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-16185249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-6186233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10188238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MDSFAWASVS QAAGLAGGSA VVSDGRSGGL LPPPMLGLQL PSPAALEHFM DPGLVQLAMR  60
SSYITSEEHP LQATTGSGNG EPGFGGGGDA PSAEACSSRV PEPDSNSNKR KRSNESQDVL  120
GMIGTDQDQG MPSVDSSKER GEDDAKGKEE TPPATRKKKG KGASAADGES ESYIHVRARK  180
GQATNRHSLA ERLRREKISE RMKLLQDLVP GCTKVTGKAV MLDEIINYVQ SLQRQVEFLS  240
MKLAAVNPQL GLNIKQLLSK DLFRAPSGPS SSSAHLGFSF SHEMMPILPP MSRSGVLPGG  300
VHGLANSDGF RTAMEEQLNG KDSIADHVSQ SQPLQQMPLT LDGSFHHNAA QTAVYGATVG  360
PEHLGMRSDQ DRFHM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G224200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021320330.10.0transcription factor bHLH49 isoform X1
TrEMBLA0A1Z5RB880.0A0A1Z5RB88_SORBI; Uncharacterized protein
STRINGSb07g028945.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.32e-47bHLH family protein