PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.007G210200.1.p | ||||||||
Common Name | Sb07g027740, SORBIDRAFT_07g027740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | SBP | ||||||||
Protein Properties | Length: 410aa MW: 42314.6 Da PI: 8.646 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.5 | 6.2e-41 | 95 | 170 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv+gC++dl+++k y+ rhkvC++hsk p v+v+gleqrfCqqCsrfh+l efD+ k+sCrrrLa+hnerrr++ Sobic.007G210200.1.p 95 RCQVDGCNVDLTDVKPYYCRHKVCKMHSKEPRVVVNGLEQRFCQQCSRFHQLPEFDQLKKSCRRRLAGHNERRRRP 170 6*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.5E-33 | 91 | 157 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.684 | 93 | 170 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.66E-39 | 94 | 174 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-31 | 96 | 169 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MESGGASGGG GGGGGDDQLH GLKFGKKIYF EDAAAAGSSS GGGGGGSGNA SATTAAPATQ 60 QPSPPQAASP RAASGGGGRR GRAAGGPSPA PAPARCQVDG CNVDLTDVKP YYCRHKVCKM 120 HSKEPRVVVN GLEQRFCQQC SRFHQLPEFD QLKKSCRRRL AGHNERRRRP PPGPLATRYG 180 RLAASFGEEP GRFRSFMLDF SYPRVPTAMR DGFPAVRPGE RAPGSIQWQA SLDPHHHQSA 240 VAGYSAHSYG SQGSSSSRPP VFPGPEIPPG GCLAGVPSDS SCALSLLSTQ PWDTTHSSGH 300 SHAASMPATA GFDGNPVAPS LMASSYIAPS PWTDSRGHEG GRNVPQLPPD VPLSEVHSGS 360 SSHHGQFSGE LELALQGNRP APGSAPAPRN DQGSTGAFDQ SGNTMDWSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-29 | 96 | 169 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.007G210200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002444771.1 | 0.0 | squamosa promoter-binding-like protein 14 isoform X1 | ||||
Swissprot | Q7EXZ2 | 1e-143 | SPL14_ORYSJ; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | C5YIS0 | 0.0 | C5YIS0_SORBI; Uncharacterized protein | ||||
STRING | Sb07g027740.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2527 | 37 | 87 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 3e-40 | squamosa promoter binding protein-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.007G210200.1.p |
Entrez Gene | 8064025 |