PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.007G205300.1.p | ||||||||
Common Name | Sb07g027270, SORBIDRAFT_07g027270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 227aa MW: 24181.3 Da PI: 8.6741 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.5 | 2.5e-11 | 54 | 100 | 5 | 55 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 G r++ +g W+ eIr+p++ r ++++g+f+++ +Aa a++aa +++g Sobic.007G205300.1.p 54 GLRFRD-SGNWATEIRVPRT---REKVWIGTFDSPRQAALAYDAAVFCFFG 100 899**9.7*********965...4*********************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 17.53 | 38 | 112 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-13 | 51 | 112 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.7E-15 | 51 | 118 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-18 | 52 | 113 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.65E-15 | 54 | 114 | No hit | No description |
Pfam | PF00847 | 4.4E-6 | 54 | 97 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MCGNKNGELF VAAISSATAV RKVKGKGKRK GKARVRSGHR GVAAGKQKLS AWTGLRFRDS 60 GNWATEIRVP RTREKVWIGT FDSPRQAALA YDAAVFCFFG DRAPKSRKTN FPAAPRPEIS 120 DTDRAKLSIA DVKKISEKHA RKVDALLPPL EAAPDADGLV VAPATPPVAV DAPPAGAGGP 180 AAPPDSADED GELDQLVRDI DIEAFEAELD ALTYLVSDNE YNELYA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.007G205300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002444752.1 | 1e-162 | ethylene-responsive transcription factor ERF018 | ||||
TrEMBL | C5YIM4 | 1e-161 | C5YIM4_SORBI; Uncharacterized protein | ||||
STRING | Sb07g027270.1 | 1e-162 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5444 | 25 | 55 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31060.1 | 4e-19 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.007G205300.1.p |
Entrez Gene | 8064006 |