PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.007G205100.1.p | ||||||||
Common Name | Sb07g027250, SORBIDRAFT_07g027250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 245aa MW: 25596.9 Da PI: 8.4941 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.1 | 8e-12 | 46 | 94 | 4 | 56 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +GVr + +g W+AeIr p++ r r ++g+f a +Aa a++aa+ +++ge Sobic.007G205100.1.p 46 TGVR-ERLWGGWAAEIRIPRT---RSRLWVGRFQHALQAALAYDAAMFCFYGE 94 6998.777**********965...4************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 17.517 | 44 | 105 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-11 | 44 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-12 | 45 | 96 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-19 | 45 | 105 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.0E-6 | 47 | 94 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.06E-16 | 47 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MTATAPTSSS AAASGGRSQS QKRRAGGRST TAATGARRPH KDLGWTGVRE RLWGGWAAEI 60 RIPRTRSRLW VGRFQHALQA ALAYDAAMFC FYGERLPSQR KFNFPGAPRP AIPEHIRVQL 120 TVANIKEIAA DYGRSCAGLF FVAPPPAQLC PTPPAPPAPL TTTPPLMVPA PAPALATYGA 180 AAAAAAASAE ATSTQTDVHA AGNAGNRVDG EFMASADDCL LSCNPDDFVG VLDIDEVDLF 240 IGQN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.007G205100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727514 | 1e-134 | KJ727514.1 Zea mays clone pUT5373 AP2-EREBP transcription factor (EREB150) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002444750.1 | 1e-177 | ethylene-responsive transcription factor ERF015 | ||||
TrEMBL | C5YIM2 | 1e-176 | C5YIM2_SORBI; Uncharacterized protein | ||||
STRING | Sb07g027250.1 | 1e-177 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5444 | 25 | 55 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31060.1 | 2e-14 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.007G205100.1.p |
Entrez Gene | 8081348 |