PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.007G200400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | LBD | ||||||||
Protein Properties | Length: 202aa MW: 21605.9 Da PI: 5.2548 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.2 | 5.7e-38 | 30 | 130 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+Ca+dCvlapyfpa+qp+++a vh +FG+sn++++l++lp +er +a+++++ eA++r++dPvyG++g+i+ lqq+++ Sobic.007G200400.1.p 30 RCAACKYLRRRCAPDCVLAPYFPASQPRRYADVHAVFGTSNLTRVLQSLPVQERGRAADTMATEAHWRVQDPVYGCTGIIHGLQQEIRD 118 6**************************************************************************************** PP DUF260 90 lkaelallkeel 101 ++++la+++++l Sobic.007G200400.1.p 119 VQQQLATTRAQL 130 *******99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.009 | 29 | 130 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.7E-38 | 30 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MSAGAGGGGG MEMDHQHPDS AGSATAVARR CAACKYLRRR CAPDCVLAPY FPASQPRRYA 60 DVHAVFGTSN LTRVLQSLPV QERGRAADTM ATEAHWRVQD PVYGCTGIIH GLQQEIRDVQ 120 QQLATTRAQL AMHLHGSGTA PPSSSPQPPL AAAAAATVTV NSGGRHRVSV HEDDEEQQQE 180 EEEEEAPLMD PDEFLDLDGR L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-34 | 31 | 146 | 12 | 127 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-34 | 31 | 146 | 12 | 127 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.007G200400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002444738.2 | 1e-147 | LOB domain-containing protein 24 | ||||
Swissprot | P59468 | 3e-37 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A1Z5RAU0 | 1e-145 | A0A1Z5RAU0_SORBI; Uncharacterized protein | ||||
STRING | Sb07g026800.1 | 1e-137 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5282 | 35 | 62 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 1e-36 | LOB domain-containing protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.007G200400.1.p |