PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.007G192900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 252aa MW: 27840.6 Da PI: 8.2194 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85 | 4.4e-27 | 90 | 139 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ + rqv fskRr g++KKA+ELSvLCda+va+++fs+ g+lye++s Sobic.007G192900.1.p 90 RIEDRTSRQVRFSKRRSGLFKKAYELSVLCDAQVALVVFSPAGRLYEFAS 139 8***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.0E-32 | 78 | 140 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.52 | 81 | 141 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-27 | 83 | 103 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.91E-35 | 83 | 151 | No hit | No description |
SuperFamily | SSF55455 | 6.41E-28 | 83 | 162 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-26 | 90 | 137 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-27 | 103 | 118 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-27 | 118 | 139 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
METPSVRFPT HVQLAERARE QRSDHATQAS SSPLARLFSS VGCPPTQGLG KIEMEVGAAA 60 RRRARAAHQQ EEIRESKAGR RKRGPVELRR IEDRTSRQVR FSKRRSGLFK KAYELSVLCD 120 AQVALVVFSP AGRLYEFASA DSSIEKVFGR YWDLANTEID LNIEARESRV NCNIQLSQNE 180 EPIGGSLADL LIMIAQGAME ENLNDLNMAG IRGLEEALGD ALAVIRNKLT MKVTGCLGGP 240 EPEVCTFFHQ Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n6j_A | 5e-19 | 83 | 184 | 2 | 93 | Myocyte-specific enhancer factor 2B |
1n6j_B | 5e-19 | 83 | 184 | 2 | 93 | Myocyte-specific enhancer factor 2B |
1tqe_P | 5e-19 | 83 | 174 | 3 | 84 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 5e-19 | 83 | 174 | 3 | 84 | Myocyte-specific enhancer factor 2B |
1tqe_R | 5e-19 | 83 | 174 | 3 | 84 | Myocyte-specific enhancer factor 2B |
1tqe_S | 5e-19 | 83 | 174 | 3 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_A | 5e-19 | 83 | 174 | 3 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_B | 5e-19 | 83 | 174 | 3 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_C | 5e-19 | 83 | 174 | 3 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_D | 5e-19 | 83 | 174 | 3 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_E | 5e-19 | 83 | 174 | 3 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_F | 5e-19 | 83 | 174 | 3 | 84 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 60 | 82 | RRRARAAHQQEEIRESKAGRRKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.007G192900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU943151 | 9e-83 | EU943151.1 Zea mays clone 1571160 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002445812.2 | 0.0 | MADS-box transcription factor 51 isoform X1 | ||||
TrEMBL | A0A1B6PIN3 | 0.0 | A0A1B6PIN3_SORBI; Uncharacterized protein | ||||
STRING | Sb07g026180.1 | 1e-143 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51870.2 | 3e-27 | AGAMOUS-like 71 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.007G192900.1.p |