PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.007G188701.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 302aa MW: 32150.6 Da PI: 10.1697 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.5 | 5.3e-21 | 147 | 196 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae+Aa+a++aa+++++g Sobic.007G188701.1.p 147 RYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFDTAEDAARAYDAAALRFKG 196 69*******.**********64....55************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-32 | 147 | 204 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.567 | 147 | 204 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-23 | 147 | 205 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.22E-18 | 147 | 204 | No hit | No description |
SMART | SM00380 | 5.5E-37 | 147 | 210 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.1E-14 | 147 | 196 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-12 | 148 | 159 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-12 | 170 | 186 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MANEVRDHHT MGAPERGYGT SDRPDTYVKN QRTIEEYSYG RCLARAAAAH ASVDRPREIS 60 AAAAAAHQQG ARRDEAQAAA GGSGGVWWRP PLRAEDEHAV IVAALAHVVG EGRQAQQQQP 120 PPVLGHGQQV MHRTAPAVEP PQQQRLRYRG VRQRPWGKWA AEIRDPVKAA RVWLGTFDTA 180 EDAARAYDAA ALRFKGAKAK LNFPFQQPAT TATASTSATL APTPRQGTRH AAAAPAGAHQ 240 QEFPDLSRYA HILQSGGDLD LQAFSGAGGL TPGRSSTTTA SASSSSPPAP SVDWFPWRGP 300 A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-23 | 148 | 206 | 6 | 65 | ATERF1 |
3gcc_A | 5e-23 | 148 | 206 | 6 | 65 | ATERF1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.007G188701.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064252 | 1e-70 | AK064252.1 Oryza sativa Japonica Group cDNA clone:002-105-C06, full insert sequence. | |||
GenBank | AP004464 | 1e-70 | AP004464.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0665C04. | |||
GenBank | AP014964 | 1e-70 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY341827 | 1e-70 | AY341827.1 Oryza sativa (japonica cultivar-group) AP2 domain-containing protein AP29 mRNA, complete cds. | |||
GenBank | CP012616 | 1e-70 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002445794.2 | 1e-117 | ethylene-responsive transcription factor ERF113 | ||||
TrEMBL | A0A1Z5RBI8 | 0.0 | A0A1Z5RBI8_SORBI; Uncharacterized protein | ||||
STRING | Sb07g025843.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4447 | 35 | 71 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61890.1 | 1e-21 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.007G188701.1.p |