PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G181500.1.p
Common NameSb07g025210, SORBIDRAFT_07g025210
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 241aa    MW: 24751.5 Da    PI: 5.2897
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G181500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-184899154
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkle 54
                          + ++GVr++ + grWv+e+r+p   g +  r ++g+f+tae Aa+a++aa+++l 
  Sobic.007G181500.1.p 48 PVFRGVRRRGRAGRWVCEVRVP---GsRGDRLWVGTFDTAEAAARAHDAAMLALC 99
                          579******************9...5445**********************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-1348100IPR001471AP2/ERF domain
SMARTSM003802.5E-2049114IPR001471AP2/ERF domain
PROSITE profilePS5103220.38949108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-2849110IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-1849110IPR016177DNA-binding domain
PRINTSPR003678.3E-55061IPR001471AP2/ERF domain
PRINTSPR003678.3E-57490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDFKRTTTEP PAAATSPSAS PSLGSSGQHP SPPKRPAGRT KFQETRHPVF RGVRRRGRAG  60
RWVCEVRVPG SRGDRLWVGT FDTAEAAARA HDAAMLALCG DAACLNFADS ASLLHVPRPA  120
ADPSAAVGLP DVQRAATEAV AGFMLQRQRG GHDAPAAASQ DNAASASAAA AGVDHAHAPR  180
AVGPPAVDSL LELDVFGGMD DAGSYYASLA QGLLIDPPPP AVDCPDEDED CGAGEMELWG  240
*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G181500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9582271e-113EU958227.1 Zea mays clone 1679636 dehydration-responsive element-binding protein 1B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444636.11e-170dehydration-responsive element-binding protein 1J
SwissprotA2YXQ75e-61DRE1J_ORYSI; Dehydration-responsive element-binding protein 1J
TrEMBLC5YH671e-169C5YH67_SORBI; Uncharacterized protein
STRINGSb07g025210.11e-170(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Representative plantOGRP1539234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.13e-20C-repeat/DRE binding factor 2