PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G164900.1.p
Common NameSb07g023803, SORBIDRAFT_07g023803
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 132aa    MW: 14119.4 Da    PI: 9.4616
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G164900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79.4e-21860156
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                          ++y+GVr+++ +g+++AeIrd      ++ r++lg+f+taeeAa+a+++a+ +++g+
  Sobic.007G164900.1.p  8 TKYRGVRRRP-SGKFAAEIRDS---SrQSVRVWLGTFDTAEEAARAYDRAAYAMRGH 60
                          69********.7*********3...2236**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-16860IPR001471AP2/ERF domain
CDDcd000189.36E-19868No hitNo description
Gene3DG3DSA:3.30.730.101.6E-30968IPR001471AP2/ERF domain
SMARTSM003801.7E-33973IPR001471AP2/ERF domain
PROSITE profilePS5103222.972967IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-23968IPR016177DNA-binding domain
PRINTSPR003673.5E-101021IPR001471AP2/ERF domain
PRINTSPR003673.5E-103349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MDDGGEPTKY RGVRRRPSGK FAAEIRDSSR QSVRVWLGTF DTAEEAARAY DRAAYAMRGH  60
LAVLNFPAEA RNYVRGGGSS SSSRQQHQQQ QQQGGGGGGG GSGGGRQVIE LEYLDDQVLQ  120
EMLKGGDGKN N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-3241189114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G164900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445669.24e-90ethylene-responsive transcription factor ERF096
SwissprotQ9LTC52e-35ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1B6PI599e-89A0A1B6PI59_SORBI; Uncharacterized protein
STRINGSb07g023803.15e-84(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.15e-22Ethylene-responsive element binding factor 14
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]