PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G162700.1.p
Common NameSb07g023575, SORBIDRAFT_07g023575
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 389aa    MW: 41187.5 Da    PI: 7.1708
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G162700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.41e-1981131155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           + y+GVr++  +g+WvAeIr+p   + r +r +lg+fg+a eAa+a+++a+++l+g
  Sobic.007G162700.1.p  81 CPYRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFGSALEAARAYDNAARQLYG 131
                           67*****999.**********8...3.35***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-1382131IPR001471AP2/ERF domain
SMARTSM003804.9E-3282145IPR001471AP2/ERF domain
PROSITE profilePS5103220.86382139IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-1982139IPR016177DNA-binding domain
CDDcd000182.87E-2783139No hitNo description
Gene3DG3DSA:3.30.730.101.5E-2883140IPR001471AP2/ERF domain
PRINTSPR003673.5E-98394IPR001471AP2/ERF domain
PRINTSPR003673.5E-9105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEVAEMQRQR QQFVHHLQVH HQQQGTTHHQ PLLSSPPPHH QQQQNSGSSS RAGGGGRRCC  60
PLRRSRKGCM KGKGGPDNQQ CPYRGVRQRT WGKWVAEIRE PNRGARLWLG TFGSALEAAR  120
AYDNAARQLY GDCARLNLQQ MPVPPPSAAA AGGGGGGGGG GAAAVVVSSA PSPDAVAAAG  180
PGGGGGGGHN RHHQYLQQQQ QQQAAMASSA PIMMMQYSAS SYSADASSSN SDSFSNSYSS  240
SSPVTMAPSP TTNNYNHHQT FQMTPPPSSC GVVMAPAAAP QAQQGCHVDD TTTTTLAMQH  300
QQMIRELAAV PLHQEADDDF EDFMTRLPKA EDFGLQGFQE VPPEVFDEAA GIWDHTAAAW  360
STPATMMTID SAAGAAHQHQ QQVVVPLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1383138359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A3e-13791381171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G162700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9520581e-108EU952058.1 Zea mays clone 1066007 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444543.20.0ethylene-responsive transcription factor ABI4
TrEMBLA0A1Z5RA700.0A0A1Z5RA70_SORBI; Uncharacterized protein
STRINGSb07g023575.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.12e-36ERF family protein