PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G153300.1.p
Common NameSb07g022700, SORBIDRAFT_07g022700
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 537aa    MW: 56780.2 Da    PI: 8.5438
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G153300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.91.9e-066991123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          y+C++Cg+ F r  nL+ H r+H
  Sobic.007G153300.1.p 69 YVCEICGQGFQRDQNLQMHRRRH 91
                          9*********************9 PP
2zf-C2H211.50.00092148169223
                           EETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                            C  C+k +  +s++k H++t+
  Sobic.007G153300.1.p 148 ACARCSKAYAVHSDYKAHLKTC 169
                           6*******************98 PP
3zf-C2H210.70.0017177195523
                           TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                           dCg++Fsr +++  H+ t+
  Sobic.007G153300.1.p 177 DCGRVFSRVESFIEHQDTC 195
                           9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.85E-56692No hitNo description
Gene3DG3DSA:3.30.160.603.0E-56891IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00326991IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6356991IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SMARTSM00355110111141IPR015880Zinc finger, C2H2-like
SMARTSM00355230147174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MLSSCAPTTA FPPPETGAAP PEPPFRSLQI ATTSAAAGAK KKRRPAGTPD PDAEVVSLSP  60
RTLLESDRYV CEICGQGFQR DQNLQMHRRR HKVPWKLLKR EAGEAARKRV FVCPEPSCLH  120
HDPSHALGDL VGIKKHFRRK HSGHRQWACA RCSKAYAVHS DYKAHLKTCG TRGHTCDCGR  180
VFSRVESFIE HQDTCNAGRP RAETSSSPAS GGGGGGGGAG FGMAAAGGAS TSQQQRQLHA  240
AAAAAALSRT ASSASPSSGG EFGVSQQQVA CWPAGPAIAS PTAAATFHRF DPALSSPPTP  300
QYERPGGGGG GVHHNLELQL MPPRGSGSYY DAGGTTPAAA VATRCYAFSP HSPAVGLGAD  360
PMRLQLSMGF GGGDNDDDSE TSAPAATAAA RLKEEAREQM RLAMAEKAAA DDARAQARRQ  420
AELAEQELAT ARRMRQQAQA ELGRAHALRD HAVRQVDATL LQVTCYSCRC KFRARAATGT  480
GGAMSSEVAS YVSSVVTEGG DAEVDDDPYR HHHHHRHRQL NADDDAPSHA RMMDIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-16143197357Zinc finger protein JACKDAW
5b3h_F1e-16143197357Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13943KKKRR
23944KKKRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G153300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067960.0AK106796.1 Oryza sativa Japonica Group cDNA clone:002-116-B04, full insert sequence.
GenBankAK1195950.0AK119595.1 Oryza sativa Japonica Group cDNA clone:002-117-D09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444487.10.0protein indeterminate-domain 14
TrEMBLC5YM720.0C5YM72_SORBI; Uncharacterized protein
STRINGSb07g022700.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.12e-95indeterminate(ID)-domain 14