PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.007G153300.1.p | ||||||||
Common Name | Sb07g022700, SORBIDRAFT_07g022700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C2H2 | ||||||||
Protein Properties | Length: 537aa MW: 56780.2 Da PI: 8.5438 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.9 | 1.9e-06 | 69 | 91 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg+ F r nL+ H r+H Sobic.007G153300.1.p 69 YVCEICGQGFQRDQNLQMHRRRH 91 9*********************9 PP | |||||||
2 | zf-C2H2 | 11.5 | 0.00092 | 148 | 169 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C C+k + +s++k H++t+ Sobic.007G153300.1.p 148 ACARCSKAYAVHSDYKAHLKTC 169 6*******************98 PP | |||||||
3 | zf-C2H2 | 10.7 | 0.0017 | 177 | 195 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ Sobic.007G153300.1.p 177 DCGRVFSRVESFIEHQDTC 195 9***************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.85E-5 | 66 | 92 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.0E-5 | 68 | 91 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0032 | 69 | 91 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.635 | 69 | 91 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 111 | 141 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 230 | 147 | 174 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 537 aa Download sequence Send to blast |
MLSSCAPTTA FPPPETGAAP PEPPFRSLQI ATTSAAAGAK KKRRPAGTPD PDAEVVSLSP 60 RTLLESDRYV CEICGQGFQR DQNLQMHRRR HKVPWKLLKR EAGEAARKRV FVCPEPSCLH 120 HDPSHALGDL VGIKKHFRRK HSGHRQWACA RCSKAYAVHS DYKAHLKTCG TRGHTCDCGR 180 VFSRVESFIE HQDTCNAGRP RAETSSSPAS GGGGGGGGAG FGMAAAGGAS TSQQQRQLHA 240 AAAAAALSRT ASSASPSSGG EFGVSQQQVA CWPAGPAIAS PTAAATFHRF DPALSSPPTP 300 QYERPGGGGG GVHHNLELQL MPPRGSGSYY DAGGTTPAAA VATRCYAFSP HSPAVGLGAD 360 PMRLQLSMGF GGGDNDDDSE TSAPAATAAA RLKEEAREQM RLAMAEKAAA DDARAQARRQ 420 AELAEQELAT ARRMRQQAQA ELGRAHALRD HAVRQVDATL LQVTCYSCRC KFRARAATGT 480 GGAMSSEVAS YVSSVVTEGG DAEVDDDPYR HHHHHRHRQL NADDDAPSHA RMMDIN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-16 | 143 | 197 | 3 | 57 | Zinc finger protein JACKDAW |
5b3h_F | 1e-16 | 143 | 197 | 3 | 57 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 39 | 43 | KKKRR |
2 | 39 | 44 | KKKRRP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.007G153300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106796 | 0.0 | AK106796.1 Oryza sativa Japonica Group cDNA clone:002-116-B04, full insert sequence. | |||
GenBank | AK119595 | 0.0 | AK119595.1 Oryza sativa Japonica Group cDNA clone:002-117-D09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002444487.1 | 0.0 | protein indeterminate-domain 14 | ||||
TrEMBL | C5YM72 | 0.0 | C5YM72_SORBI; Uncharacterized protein | ||||
STRING | Sb07g022700.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1051 | 38 | 124 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68130.1 | 2e-95 | indeterminate(ID)-domain 14 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.007G153300.1.p |
Entrez Gene | 8080658 |