PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G141600.2.p
Common NameSb07g021710, SORBIDRAFT_07g021710
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 364aa    MW: 40926.9 Da    PI: 6.1637
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G141600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.0004315336122
                           EEETTTTEEESSHHHHHHHHHH CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                           ++C++C   +++ s+L++H+r 
  Sobic.007G141600.2.p 315 WTCSICQANCTSESDLENHLRG 336
                           58******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.98E-6169224No hitNo description
SMARTSM004516.7E-4186220IPR003604Zinc finger, U1-type
SMARTSM0035515189213IPR015880Zinc finger, C2H2-like
PROSITE profilePS501718.529189219IPR000690Zinc finger, C2H2-type matrin
SuperFamilySSF576674.32E-8242281No hitNo description
SMARTSM004510.0023245279IPR003604Zinc finger, U1-type
PfamPF128747.8E-8248272No hitNo description
SMARTSM003551.7248272IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280250272IPR007087Zinc finger, C2H2
SuperFamilySSF576671.39E-9307348No hitNo description
SMARTSM004512.6E-6312346IPR003604Zinc finger, U1-type
PfamPF128744.0E-9315339No hitNo description
SMARTSM003550.052315339IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280317339IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MEIVRRAAAT ARLGDDDYRL PDPSPPHGQM SVDALRRELV KESIIQEIIA TELAEQRGLE  60
SEVPRELGLE HAGPVSLWTP AGLQLTTLPH HDTSPVRQRG LLHLGMPTLP ESCLEEGLLT  120
PGGMPVPRRS VKDRIDEWYR PPWHRISANE DALTEIEWAR LPKKTFSGVK RKRTDETSEA  180
NNKRLPEKWI CDLCHVNTSG EISFVEHCAG YRHQSNVADM EWAMETAEPT MIATAELYRS  240
MHHNPTAWNC SICQVKCSGE LDLNNHLNGR RHQENLGALW RESKEDEGES GSQEANLYEK  300
KEPQLVDMNQ RHSGWTCSIC QANCTSESDL ENHLRGRRHQ QNVNAQLVEA NSTTVAAHLG  360
GKK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G141600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445568.10.0uncharacterized protein LOC8077850
RefseqXP_021320142.10.0uncharacterized protein LOC8077850
TrEMBLC5YLL80.0C5YLL8_SORBI; Uncharacterized protein
STRINGSb07g021710.10.0(Sorghum bicolor)