PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G137300.1.p
Common NameSb07g021290, SORBIDRAFT_07g021290
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 292aa    MW: 31275.4 Da    PI: 6.0803
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G137300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.16.1e-311972255
               G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                          +rlrWt +LH+rFv av+qLGG++kAtPk++l++m v+gLtl+h+kSHLQkYRl
  Sobic.007G137300.1.p 19 ARLRWTRQLHDRFVLAVAQLGGADKATPKSVLRAMAVPGLTLYHLKSHLQKYRL 72
                          7****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-311776IPR009057Homeodomain-like
SuperFamilySSF466899.32E-161875IPR009057Homeodomain-like
TIGRFAMsTIGR015579.6E-231973IPR006447Myb domain, plants
PfamPF002496.2E-62071IPR001005SANT/Myb domain
PfamPF143797.4E-16122161IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MSSLGGQQQQ HGHGEAARAR LRWTRQLHDR FVLAVAQLGG ADKATPKSVL RAMAVPGLTL  60
YHLKSHLQKY RLAVSRGVAS PLGDNGDGTI ERSSSSESQP DEYDDDGTIA ELHGDSSRTM  120
ARMQREVQRK LQEQIEVQRH LQLRIEAQGR YLQSVLRRAQ EVLADDHSLG SPAGAEAAKG  180
ELSELAASAV ETAGCLSSSC SCCCCSPSPS PTRHRSADSS CVTSSSSSEA ESHQAPAAGA  240
KWRLHTCGAG TTRDCSDVDQ PVLQAEESTF LQRHDAEDAE DGTSSEIDLN R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-181776160Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-181776160Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-181873156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-181873156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-181873156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-181873156Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-181776160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-181776160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-181776160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-181776160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-181776160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-181776160Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.3860.0ovary| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G137300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0609181e-165BT060918.2 Zea mays full-length cDNA clone ZM_BFb0071B24 mRNA, complete cds.
GenBankJX4699881e-165JX469988.1 Zea mays subsp. mays clone UT3348 G2-like transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444396.10.0myb family transcription factor APL
TrEMBLC5YL870.0C5YL87_SORBI; Uncharacterized protein
STRINGSb07g021290.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112643038
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.34e-49G2-like family protein