PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.007G132600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 360aa MW: 38343.3 Da PI: 6.1656 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.2 | 1e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv + G +W+++++ g+ R++k+c++rw +yl Sobic.007G132600.1.p 14 KGPWTAEEDQKLVSFILGNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.5 | 5.4e-17 | 71 | 111 | 5 | 47 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + E++l +d+++qlG++ W++Ia++++ gRt++++k++w+++ Sobic.007G132600.1.p 71 SDAEEKLVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111 778***************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-19 | 5 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.15 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.99E-26 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.7E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 26.833 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 63 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 71 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.06E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 360 aa Download sequence Send to blast |
MGRQPCCDKV GLKKGPWTAE EDQKLVSFIL GNGQCCWRAV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL SDAEEKLVID LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLKKMG 120 IDPLTHKPLC PSSSSSSSSA DPQQLQSPPP TAATGGSTEA QAAQPSPSPP SRKPPEQKTA 180 AAPVTTPPPA ATIAASRQEL AGDDADGLLL SNSDPGFCTD EVPMMHPDEI MVPVLGDQRL 240 HTPPLPTFSP ATAAAAAAAV STTPTTTTSS SAAASAASSS SLISRDEDAA LFPLIDMDFP 300 EIVFRMGLDD MVASWDDSLA QPPLSPSLPV YEDSAYQLQR SGVAFDQEPG NKIQLFSSY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-30 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00513 | DAP | Transfer from AT5G16600 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.007G132600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT036229 | 0.0 | BT036229.1 Zea mays full-length cDNA clone ZM_BFb0101M11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002444373.2 | 0.0 | myb-related protein Zm38 | ||||
TrEMBL | A0A1B6PHL6 | 0.0 | A0A1B6PHL6_SORBI; Uncharacterized protein | ||||
STRING | Sb07g020880.1 | 1e-167 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66230.1 | 3e-88 | myb domain protein 20 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.007G132600.1.p |