PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.007G132000.2.p | ||||||||
Common Name | Sb07g020820, SORBIDRAFT_07g020820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | G2-like | ||||||||
Protein Properties | Length: 419aa MW: 43119.5 Da PI: 9.8685 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.8 | 4.4e-32 | 272 | 325 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Sobic.007G132000.2.p 272 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 325 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.51E-15 | 269 | 326 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-28 | 270 | 326 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.7E-24 | 272 | 325 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.1E-7 | 273 | 324 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009887 | Biological Process | organ morphogenesis | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MEARAASAPD LSLHISLPSS TTASSPSAPA PGLGAAGGAG RGAQQPAAGG DPWRRLNGST 60 ASTELSLSPP PRQQEAVAAG DVLPWRFRPP PATNNYSSST TAEVATFVPV TVPRLSFDAA 120 AEAEAARARP INGVPVYSSP RAGAAHPFLG GGGGEYRQQG HHHSKAAGLY NNPYHSSSWP 180 SSMLRSTTTT TSPGAVAPSA SDPAAASSYL SPPSAYHRML SSTGRLHLQG VLADTLRGYG 240 GGGHHQHQHL GSLAAARYMP RLPVSRRGMR APRMRWTSSL HARFVHAVEL LGGHERATPK 300 SVLELMDVKD LTLAHVKSHL QMYRTVKSTD KPATSSGPGD GGGGSGDDDL PCAQRAPSSS 360 AGREVSPQAF TGHRSASSEG AASHAGGDVE CSSADDSDGG RPRSASSSRY IYVSFSSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 8e-16 | 273 | 327 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 8e-16 | 273 | 327 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 8e-16 | 273 | 327 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 8e-16 | 273 | 327 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:18594992}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.007G132000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021320046.1 | 0.0 | probable transcription factor RL9 | ||||
Swissprot | Q0J235 | 8e-69 | ROLL9_ORYSJ; Probable transcription factor RL9 | ||||
TrEMBL | A0A1Z5R9M0 | 0.0 | A0A1Z5R9M0_SORBI; Uncharacterized protein | ||||
STRING | Sb07g020820.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32240.1 | 1e-40 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.007G132000.2.p |
Entrez Gene | 8075385 |