PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.007G124100.1.p | ||||||||
Common Name | Sb07g020090, SORBIDRAFT_07g020090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 272aa MW: 29265.1 Da PI: 5.7812 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.1 | 6.8e-21 | 91 | 140 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ +l+g Sobic.007G124100.1.p 91 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 140 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.57E-31 | 90 | 150 | No hit | No description |
SMART | SM00380 | 1.5E-35 | 91 | 154 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.354 | 91 | 148 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.8E-33 | 91 | 150 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-23 | 91 | 150 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.4E-15 | 92 | 140 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-11 | 92 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-11 | 114 | 130 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MAAAINLPGP SEDLMRAMES FMQEDAAPSP LPMPPAAQYP PATPTHLSPA QMQFIQAQLH 60 LQRNPGLGPR AQPMKPAVPI PPAQQRPAQK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT 120 FDTAEEAALA YDQAAYRLRG DAARLNFPDN AASRAPLDPA VDAKLQAICA TIAAASSKGG 180 ARAKQSKAMP INAPVLEATA ACPSNSSSDE GSGSDEEMSS RTTTTPVVVA PPVVADMGQL 240 DFSEAPWDEA ESFVLRKYPS YEIDWDALLS N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-20 | 90 | 148 | 4 | 63 | ATERF1 |
3gcc_A | 3e-20 | 90 | 148 | 4 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.18556 | 0.0 | embryo| leaf| ovary| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.007G124100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727818 | 0.0 | KJ727818.1 Zea mays clone pUT5770 AP2-EREBP transcription factor (EREB204) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002444319.1 | 0.0 | ethylene-responsive transcription factor ERF060 | ||||
TrEMBL | C5YKT7 | 0.0 | C5YKT7_SORBI; Uncharacterized protein | ||||
STRING | Sb07g020090.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 2e-40 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.007G124100.1.p |
Entrez Gene | 8073540 |