PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.007G118301.1.p | ||||||||
Common Name | Sb07g019400, SORBIDRAFT_07g019400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | WRKY | ||||||||
Protein Properties | Length: 341aa MW: 35622.7 Da PI: 6.9795 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 86.1 | 3.1e-27 | 131 | 191 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqK++ g+++pr+YYrCt++ +Cp++k+v+r+++ p +++++Y+geH+++ Sobic.007G118301.1.p 131 DDGHSWRKYGQKDILGAKHPRAYYRCTHRnsqNCPATKQVQRADDHPALFDVVYHGEHTCR 191 8***************************98999**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.022 | 125 | 193 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.2E-28 | 125 | 193 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-25 | 129 | 193 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.0E-40 | 130 | 192 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.4E-27 | 131 | 191 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MADAVESGGR ALLVSELGRV QDLVRQLEQQ LRAPADAASV DLCRRLVHQI VALTDHSIGM 60 LRASPADLAP SPPLSATGSP ISGGDATSDH HHHHPFRAAG ASPKKRKATA RWTSQQVRVS 120 AAGGGAEGPA DDGHSWRKYG QKDILGAKHP RAYYRCTHRN SQNCPATKQV QRADDHPALF 180 DVVYHGEHTC RPPAAAGGSG GAKRAQQQQH NPHAQAALQG LAARLTVATT TAAAAAAAAA 240 ALPPMTPESC PVRGASSPWS PVGSDSNGCL QHQGVSPCPV PGYGDWAPEG DLQEVVSSAF 300 AAVSSAAPLP VLDDEFMSLE CFAFDHNFDI DTAMPSLYYP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 4e-23 | 131 | 191 | 9 | 69 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.007G118301.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726907 | 0.0 | KJ726907.1 Zea mays clone pUT3452 WRKY transcription factor (WRKY25) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002444278.1 | 0.0 | probable WRKY transcription factor 41 | ||||
TrEMBL | A0A1Z5RAB5 | 0.0 | A0A1Z5RAB5_SORBI; Uncharacterized protein | ||||
STRING | Sb07g019400.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1086 | 38 | 131 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.2 | 9e-28 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.007G118301.1.p |
Entrez Gene | 8070015 |