PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.007G090421.1.p | ||||||||
Common Name | Sb06g015640, SORBIDRAFT_06g015640 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 213aa MW: 23098.4 Da PI: 8.848 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56.1 | 4.6e-18 | 16 | 64 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i+ + rqv fskRr ++KKA ELS+LC+aevav fs g+ + + Sobic.007G090421.1.p 16 KSIKGEEARQVCFSKRRPCLFKKACELSTLCGAEVAVCTFSRGGRCFSF 64 6899999**********************************99987766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.5E-21 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 21.166 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.1E-23 | 9 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.0E-15 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.3E-20 | 18 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.0E-15 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.0E-15 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MVNGRSTKGR QRIEMKSIKG EEARQVCFSK RRPCLFKKAC ELSTLCGAEV AVCTFSRGGR 60 CFSFGHPSTL PIADSFHDEH TLDGLTIGSG SHGSQGLTVE AVMQLLNANV GALGLQELEV 120 LRKDLYMVQD MVKERSREVL EDAMRARRPP PQPRMHMVAM PSQIFFGGQS AGTMYTTFPS 180 LSNGQSEGVH VNSLLHGSLG GRGNYFNGQF GG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.007G090421.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002445266.2 | 1e-103 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A1Z5R9Q7 | 1e-155 | A0A1Z5R9Q7_SORBI; Uncharacterized protein | ||||
STRING | Sb06g015640.1 | 1e-127 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36590.1 | 6e-24 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.007G090421.1.p |
Entrez Gene | 8072975 |