PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G090412.1.p
Common NameSb06g015640, SORBIDRAFT_06g015640
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 248aa    MW: 27335.2 Da    PI: 9.8364
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G090412.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.73.7e-191664149
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          k+i+ +  rqv fskRr  ++KKA ELS+LC+aevav+ fs+ g+ + +
  Sobic.007G090412.1.p 16 KSIKGEEARQVCFSKRRPCLFKKACELSTLCGAEVAVVTFSPGGRCFSF 64
                          6899999***********************************9987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.951868IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-23867IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-24980IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-151030IPR002100Transcription factor, MADS-box
PfamPF003193.8E-221864IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-153045IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-154566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MVNGKSTKGR QRIEMKSIKG EEARQVCFSK RRPCLFKKAC ELSTLCGAEV AVVTFSPGGR  60
CFSFGHPSTL SVADSFLDEH TLNGLTIGSG SHGTQELTGT NHQMNHQVME LQQLMEAEKR  120
RKERAVEAMK RESRGPVMQL LNANVGALGL QELEVLRKDL YMVQDMVKER SREVLEDAMR  180
ARRPPPQPRM HMVAMPSQSF FGGQSAGTMY TTFPSLSNGQ SEGVHVNSLL HGSLGGRGNY  240
FNGQFRG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G090412.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445266.21e-131agamous-like MADS-box protein AGL29
TrEMBLA0A1Z5R8S60.0A0A1Z5R8S6_SORBI; Uncharacterized protein
STRINGSb06g015640.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-27AGAMOUS-like 62