PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G086100.1.p
Common NameSb07g007306, SORBIDRAFT_07g007306
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 248aa    MW: 26948.9 Da    PI: 8.6087
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G086100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.26.1e-201662147
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                          kri+ +  rqv fskRr  ++KKA+ELS+LC+aevav+ fs+ gk  
  Sobic.007G086100.1.p 16 KRIKGEEARQVCFSKRRPSLFKKASELSTLCGAEVAVVTFSPGGKCL 62
                          799999************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.3E-26867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.03868IPR002100Transcription factor, MADS-box
CDDcd002651.35E-30977No hitNo description
SuperFamilySSF554551.31E-25983IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-161030IPR002100Transcription factor, MADS-box
PfamPF003191.2E-221764IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-163045IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-164566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MVKGKSTKGR QRIEMKRIKG EEARQVCFSK RRPSLFKKAS ELSTLCGAEV AVVTFSPGGK  60
CLSFGHPSTL SVADRFLAAH TLDGLTIGSD SHGTQGLTGS SQEMNQQVME LQKLMETEKR  120
RKEMLVDAMD RESGGPVMQL LNANVSALGI HELEQLRKEL CMVQDMVKEK SHEMLQDAMQ  180
TRRLPPQPPM HMAAMPWQVL SGDQRAGTMY TTVPSSSSGP CEGLHASSLL HCSHGGLGNY  240
SNGQYGG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G086100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445266.20.0agamous-like MADS-box protein AGL29
TrEMBLA0A1B6PGH40.0A0A1B6PGH4_SORBI; Uncharacterized protein
STRINGSb07g007306.11e-179(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-30AGAMOUS-like 62