PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.007G077300.1.p | ||||||||
Common Name | Sb07g006210, SORBIDRAFT_07g006210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 215aa MW: 22724.7 Da PI: 8.4523 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.8 | 3.5e-20 | 28 | 78 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 + +GVr ++ +gr++AeIrdp r +r++lg+f+t+e+Aa+a++aa+++l+g+ Sobic.007G077300.1.p 28 RLRGVRKRP-WGRYAAEIRDP---A-RkARVWLGTFDTPEQAARAYDAAARRLRGP 78 679******.**********8...2.35**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.8E-14 | 27 | 77 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.32E-16 | 27 | 84 | No hit | No description |
SMART | SM00380 | 4.1E-31 | 28 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-21 | 28 | 85 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.906 | 28 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-9 | 29 | 40 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-29 | 30 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-9 | 51 | 67 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MAPKRSISEE VTAAAELPVP EPEQGKPRLR GVRKRPWGRY AAEIRDPARK ARVWLGTFDT 60 PEQAARAYDA AARRLRGPRA TTNYTYPDAV VPAPPPCAAA QVPSASASAS AREESCSSSF 120 STRDDDYHPL AVTVAVAAPP APSQSQSPSS LDLGLGLFPA MVAAQPYLFL NPMQLAPVKR 180 EAERSCYSGS SSPSPSVLGL GLDLNLPPPA EMVM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-19 | 30 | 84 | 7 | 62 | ATERF1 |
3gcc_A | 3e-19 | 30 | 84 | 7 | 62 | ATERF1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.10127 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.007G077300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM493723 | 1e-66 | AM493723.1 Saccharum officinarum mRNA for ethylene responsive transcription factor (ERF3 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002445222.1 | 1e-150 | ethylene-responsive transcription factor 8 | ||||
TrEMBL | C5YIV9 | 1e-149 | C5YIV9_SORBI; Uncharacterized protein | ||||
STRING | Sb07g006210.1 | 1e-149 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14446 | 10 | 25 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28370.1 | 9e-19 | ERF domain protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.007G077300.1.p |
Entrez Gene | 8086051 |