PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G071000.1.p
Common NameSb07g005610, SORBIDRAFT_07g005610
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 290aa    MW: 31560.6 Da    PI: 6.5126
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G071000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.77.9e-52121451128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           +ppGfrFhP+d+elv +yL  k++g+ +    +i +vd++k+ePwdLp+++  + kewyfF  rd+kyatg+r+nrat+sgyWkatgkd
  Sobic.007G071000.1.p  12 MPPGFRFHPRDDELVLDYLLDKLSGHGHGGGAAIVDVDLNKCEPWDLPESACVGGKEWYFFNLRDRKYATGQRTNRATRSGYWKATGKD 100
                           79*************************999888***************7777799********************************** PP

                   NAM  90 kevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           ++v++         ++vg++ktLvfy+grapkg+kt+Wvmhe+rl
  Sobic.007G071000.1.p 101 RAVVAGgdggedAAAVVGMRKTLVFYRGRAPKGRKTEWVMHEFRL 145
                           ****987765544455***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-593170IPR003441NAC domain
PROSITE profilePS5100556.12812170IPR003441NAC domain
PfamPF023655.2E-2613145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MSSSISMMEA RMPPGFRFHP RDDELVLDYL LDKLSGHGHG GGAAIVDVDL NKCEPWDLPE  60
SACVGGKEWY FFNLRDRKYA TGQRTNRATR SGYWKATGKD RAVVAGGDGG EDAAAVVGMR  120
KTLVFYRGRA PKGRKTEWVM HEFRLHPHAA PSLPAAATKE DWVLCRVFYK SRTTTPRPAS  180
DDAQDGTPSA EPQLSAALPL GPLADTYTAF GGAPTVFEQV SCFSGLPALP FKRPVSLGDL  240
LAFDTSEKES IGTVMSSVSN NSSSVLELTP NCNWNQENDM LQMWNPLGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-47717112166NO APICAL MERISTEM PROTEIN
1ut4_B4e-47717112166NO APICAL MERISTEM PROTEIN
1ut7_A4e-47717112166NO APICAL MERISTEM PROTEIN
1ut7_B4e-47717112166NO APICAL MERISTEM PROTEIN
3swm_A4e-47717115169NAC domain-containing protein 19
3swm_B4e-47717115169NAC domain-containing protein 19
3swm_C4e-47717115169NAC domain-containing protein 19
3swm_D4e-47717115169NAC domain-containing protein 19
3swp_A4e-47717115169NAC domain-containing protein 19
3swp_B4e-47717115169NAC domain-containing protein 19
3swp_C4e-47717115169NAC domain-containing protein 19
3swp_D4e-47717115169NAC domain-containing protein 19
4dul_A4e-47717112166NAC domain-containing protein 19
4dul_B4e-47717112166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.158310.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G071000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443999.10.0NAC domain-containing protein 21/22
SwissprotQ84TE63e-79NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLC5YIE80.0C5YIE8_SORBI; Uncharacterized protein
STRINGSb07g005610.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.22e-72NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]