PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.007G063200.1.p | ||||||||
Common Name | Sb07g005060, SORBIDRAFT_07g005060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NF-YC | ||||||||
Protein Properties | Length: 254aa MW: 28380.1 Da PI: 4.8064 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 176.3 | 2.9e-55 | 77 | 181 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 ql+ fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trt Sobic.007G063200.1.p 77 QLREFWTTQmdeIEQTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELTLRSWMHTEENKRRTLQKNDIAAAITRT 165 89******988889*************************************************************************** PP NF-YC 87 difdflvdivprdelk 102 di+dflvdi+prde+k Sobic.007G063200.1.p 166 DIYDFLVDIIPRDEMK 181 *************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.18E-33 | 56 | 171 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.1E-37 | 91 | 163 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.7E-21 | 99 | 162 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MEPSSQPQPV MGVGSQPYPA AASYAAPTMV AGAPAVPPGS QPAAQFPNPA QLSAQHQMVY 60 QQAQQFHHQL QQQQQQQLRE FWTTQMDEIE QTTDFKNHTL PLARIKKIMK ADEDVRMISA 120 EAPVVFAKAC EVFILELTLR SWMHTEENKR RTLQKNDIAA AITRTDIYDF LVDIIPRDEM 180 KEEGLGLPRV GLPPAMGAPA DHSSYPYYYV PAQQVPGAGM MYGGQQGQPM TYMWQKPQVP 240 EEEPSEEQQQ QSP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-59 | 84 | 177 | 2 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 155 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.007G063200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT041629 | 0.0 | BT041629.1 Zea mays full-length cDNA clone ZM_BFb0020N05 mRNA, complete cds. | |||
GenBank | EU970712 | 0.0 | EU970712.1 Zea mays clone 349260 nuclear transcription factor Y subunit C-2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002443960.1 | 0.0 | nuclear transcription factor Y subunit C-4 | ||||
Refseq | XP_021320690.1 | 0.0 | nuclear transcription factor Y subunit C-4 | ||||
Refseq | XP_021320691.1 | 0.0 | nuclear transcription factor Y subunit C-4 | ||||
Refseq | XP_021320692.1 | 0.0 | nuclear transcription factor Y subunit C-4 | ||||
Refseq | XP_021320693.1 | 0.0 | nuclear transcription factor Y subunit C-4 | ||||
Refseq | XP_021320694.1 | 0.0 | nuclear transcription factor Y subunit C-4 | ||||
Swissprot | Q655V5 | 1e-114 | NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | C5YHY9 | 0.0 | C5YHY9_SORBI; Uncharacterized protein | ||||
STRING | Sb07g005060.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2703 | 37 | 90 | Representative plant | OGRP315 | 17 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 3e-71 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.007G063200.1.p |
Entrez Gene | 8071112 |
Publications ? help Back to Top | |||
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