PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G058300.1.p
Common NameSb07g004655, SORBIDRAFT_07g004655
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 173aa    MW: 18575.4 Da    PI: 4.323
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G058300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.7e-162776255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           y GVr+++ +gr++AeIr p++   + r++lg+f+taeeAa a++  + ++ g
  Sobic.007G058300.1.p 27 EYLGVRRRP-WGRYAAEIRNPVT---KERHWLGTFDTAEEAAVAYDLSAISISG 76
                          588******.**********654...5*******************99988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.17E-232684No hitNo description
SuperFamilySSF541711.31E-182685IPR016177DNA-binding domain
SMARTSM003802.7E-252791IPR001471AP2/ERF domain
PROSITE profilePS5103220.6262785IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-262784IPR001471AP2/ERF domain
PRINTSPR003677.3E-92839IPR001471AP2/ERF domain
PfamPF008474.1E-92873IPR001471AP2/ERF domain
PRINTSPR003677.3E-95066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MADAPVAAAI MGVQDQQRRR RTRASSEYLG VRRRPWGRYA AEIRNPVTKE RHWLGTFDTA  60
EEAAVAYDLS AISISGPAAA RTNFYYPRDA TALQRQAELL PYDDAPVPSP APPPSPLSGG  120
SGGGTVDDDD YECQLTVEEA DADDESMTIA AILQSFQHLN NAPSASSADS LY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1626841371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G058300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2417626e-80AK241762.1 Oryza sativa Japonica Group cDNA, clone: J065205D04, full insert sequence.
GenBankAP0051646e-80AP005164.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0054L03.
GenBankAP0149646e-80AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126166e-80CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445135.21e-122ethylene-responsive transcription factor LEP
SwissprotQ3E7031e-29ERF88_ARATH; Ethylene-responsive transcription factor ERF088
TrEMBLA0A1B6PFT71e-121A0A1B6PFT7_SORBI; Uncharacterized protein
STRINGSb07g004655.11e-116(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.19e-32ERF family protein