PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.007G055300.2.p | ||||||||
Common Name | Sb07g004460, SORBIDRAFT_07g004460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB | ||||||||
Protein Properties | Length: 307aa MW: 34836.6 Da PI: 7.7326 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.6 | 9.1e-16 | 4 | 50 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd +l d v +lG g W Ia+ ++ gR +kqc++rw ++l Sobic.007G055300.2.p 4 KGSWTVEEDSILRDMVIRLGEGKWCMIAKSLP-GRIGKQCRERWINHL 50 799*****************************.************996 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.7e-16 | 60 | 101 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eEd ll++ ++ +G++ W+tIar+++ gR ++++k++w++ Sobic.007G055300.2.p 60 WTEEEDMLLIRSHRSYGKR-WSTIARYLP-GRPENDIKNHWNSN 101 *******************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.372 | 1 | 54 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-15 | 3 | 52 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.11E-29 | 3 | 98 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.8E-22 | 4 | 52 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-13 | 4 | 50 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.63E-14 | 6 | 50 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-19 | 53 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-15 | 56 | 104 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.227 | 56 | 106 | IPR017930 | Myb domain |
CDD | cd00167 | 5.21E-14 | 60 | 102 | No hit | No description |
Pfam | PF00249 | 2.5E-14 | 60 | 101 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MSFKGSWTVE EDSILRDMVI RLGEGKWCMI AKSLPGRIGK QCRERWINHL NPNIKKNDIW 60 TEEEDMLLIR SHRSYGKRWS TIARYLPGRP ENDIKNHWNS NKRSLKSKRR LQKKKSEPVP 120 PGQLSILEEY IRSVEPEFQS AAPHPPVIDP MLLQTSVPKM EMHLNVANHT TPMHHQPRAI 180 NLNNSLLPDL NISSDPQETH YMGYPMYPPL SAPQLQLVTE EPKYASFPFA EPLTTLNKEH 240 TTVPSYYIGE SCNNIGANGH YNEVGPSNIG DNSNLGGDTN TVLELASREF IMPSSEEVSL 300 GLARFK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 9e-34 | 1 | 103 | 1 | 102 | C-Myb DNA-Binding Domain |
1msf_C | 9e-34 | 1 | 103 | 1 | 102 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.007G055300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021321219.1 | 0.0 | transcription factor MYB35-like | ||||
TrEMBL | C5YHH6 | 0.0 | C5YHH6_SORBI; Uncharacterized protein | ||||
STRING | Sb07g004460.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-37 | myb domain protein 3r-5 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.007G055300.2.p |
Entrez Gene | 8069657 |