PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G054700.1.p
Common NameSb07g004410, SORBIDRAFT_07g004410
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NF-YC
Protein Properties Length: 462aa    MW: 51818.7 Da    PI: 4.7308
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G054700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC77.81.5e-2424120396
                 NF-YC   3 ksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                           + fw+k+   ie ++df+++++P++ +kk++ a++   m+++++P++l+kace+f+ el++ +w+ a + +r+t+  sdia+a+++ + 
  Sobic.007G054700.1.p  24 EEFWMKKqeeIEATKDFRERTIPVTYLKKVICAEKGKMMMTSDTPTFLTKACEVFVQELSVHAWVCASSHNRSTILDSDIAEAIASIES 112
                           6899877677999**************************************************************************** PP

                 NF-YC  89 fdflvdiv 96 
                           +dfl d+ 
  Sobic.007G054700.1.p 113 YDFLNDVL 120
                           *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001251.6E-1125107IPR007125Histone H2A/H2B/H3
SuperFamilySSF471134.19E-1545120IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.5E-1746120IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MDCPINIRTS PRTPLSLSRQ QMIEEFWMKK QEEIEATKDF RERTIPVTYL KKVICAEKGK  60
MMMTSDTPTF LTKACEVFVQ ELSVHAWVCA SSHNRSTILD SDIAEAIASI ESYDFLNDVL  120
RAHLEKYKFD PCLQSTKKPH HMLTSQSSTS LESSLDQYQM TQFIPQYTRY NPFLCTPQPL  180
PPTNANPMHL PLPLPPQRAF SIMATPITPT PIVSGSFPPI TYMTKDLWFL RKCISNNDAA  240
LGLITPHQLL PKALPNIPNN CYVTTIASTD TYCVGSASTN NFVSQDGDMT FHFPHVPLKP  300
FQLSSSSTMD SIGSPIYTDI TELNHTKLDV THTGNSTHDI NPKATFNVDD GEQKHMGVET  360
TAANHMNVVH EELDSKVVIT TNVGANDNNI NWDEIDMASD SMLMEFWKDV MMEEEEELTP  420
LPATNDLILH PSDMVELEGC CHGSYLLDDI MFDASTDGRH N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-1428120193NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G054700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445118.10.0uncharacterized protein LOC8069654
TrEMBLC5YHH00.0C5YHH0_SORBI; Uncharacterized protein
STRINGSb07g004410.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91742145
Representative plantOGRP1164537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.29e-21nuclear factor Y, subunit C2