PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.007G047700.2.p | ||||||||
Common Name | Sb07g003900, SORBIDRAFT_07g003900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NAC | ||||||||
Protein Properties | Length: 665aa MW: 73919.9 Da PI: 4.5132 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.2 | 1.3e-52 | 12 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lp GfrFhPtdeelv++yLk k++g+ ++++evi+e+d++k+ePwdLp k +++++ ew+fF+++d+ky++g+r+nrat++gyWkatg Sobic.007G047700.2.p 12 LPLGFRFHPTDEELVTHYLKGKITGQINSEAEVIPEIDVCKCEPWDLPdKsIIQSDDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATG 100 699************************9999****************96446677778******************************* PP NAM 88 kdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 kd+ ++sk k++++g+kktLvf++grapkge+t W+mheyr Sobic.007G047700.2.p 101 KDRIIKSKgdkrKQHTIGMKKTLVFHRGRAPKGERTGWIMHEYRT 145 *******988777777***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-58 | 5 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.154 | 12 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.6E-28 | 13 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 665 aa Download sequence Send to blast |
MAKTAVMELR TLPLGFRFHP TDEELVTHYL KGKITGQINS EAEVIPEIDV CKCEPWDLPD 60 KSIIQSDDPE WFFFAPKDRK YPNGSRSNRA TEAGYWKATG KDRIIKSKGD KRKQHTIGMK 120 KTLVFHRGRA PKGERTGWIM HEYRTTEPQF DSGEQGGYVL YRLFRKQEEK TERPSPEEMD 180 RSGYSPTPSR SSPDNLEVNE EANTPLNKES PESALHDPIE LPNSVETHVG SVTRWLADRN 240 DNLVATAPDV SRIPSHGHAA VVPKQVDPSA GASAHLVNPQ NGNDDYNNFV SGFPPILPLE 300 NAFFSDIQQG AFGFDGIMNP PDALDAFLNQ TLVDPDEHSS RTSKVQYDSD IPTEFEKQWN 360 MQVEPQDDLW WANIGFEPDE PNPLLPYGTT DQDVLSVDSA ADSFNELFNS MEDPNVGMTG 420 ITLRPQQLDS TVQPSHVFAN HGDALRRMRL QVECREVITK YDSEDEVSCV VTPDCLNESV 480 ESTAVKDVVS DGDEAESTGI VIRSRHPAPS SSLESSFTQQ GTAMRRLRLQ SGLNKGPCPS 540 SDDSSSCIID ESESQHKTEK AEIEEDASTN LTGSVDDLPG NSYDDEQKNI SEHGAETAVP 600 EAKSVLRLRK TSEESNKDVK QQEGCLEPHV RAPMQRGGFQ SYIIWLVLLV ALLLLLCVGA 660 YGWV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-46 | 11 | 167 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-46 | 11 | 167 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-46 | 11 | 167 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-46 | 11 | 167 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-46 | 11 | 167 | 19 | 169 | NAC domain-containing protein 19 |
3swm_B | 8e-46 | 11 | 167 | 19 | 169 | NAC domain-containing protein 19 |
3swm_C | 8e-46 | 11 | 167 | 19 | 169 | NAC domain-containing protein 19 |
3swm_D | 8e-46 | 11 | 167 | 19 | 169 | NAC domain-containing protein 19 |
3swp_A | 8e-46 | 11 | 167 | 19 | 169 | NAC domain-containing protein 19 |
3swp_B | 8e-46 | 11 | 167 | 19 | 169 | NAC domain-containing protein 19 |
3swp_C | 8e-46 | 11 | 167 | 19 | 169 | NAC domain-containing protein 19 |
3swp_D | 8e-46 | 11 | 167 | 19 | 169 | NAC domain-containing protein 19 |
4dul_A | 7e-46 | 11 | 167 | 16 | 166 | NAC domain-containing protein 19 |
4dul_B | 7e-46 | 11 | 167 | 16 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.10205 | 0.0 | ovary| panicle |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.007G047700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021320654.1 | 0.0 | protein NTM1-like 9 isoform X1 | ||||
TrEMBL | A0A1Z5R899 | 0.0 | A0A1Z5R899_SORBI; Uncharacterized protein | ||||
STRING | Sb07g003900.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5172 | 38 | 59 | Representative plant | OGRP12970 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.2 | 5e-72 | NAC 014 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.007G047700.2.p |
Entrez Gene | 8080837 |