PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.007G028700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | LSD | ||||||||
Protein Properties | Length: 160aa MW: 16889.3 Da PI: 9.2038 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 29.1 | 1.7e-09 | 7 | 30 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 CggC+ lL+Y rGA+ V+C+ C+t Sobic.007G028700.1.p 7 CGGCKRLLQYRRGATGVCCPTCNT 30 ***********************9 PP | |||||||
2 | zf-LSD1 | 31.9 | 2.1e-10 | 84 | 106 | 1 | 23 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 Cg+Crt+L+YP+GA+ V C+ C Sobic.007G028700.1.p 84 CGQCRTTLAYPPGATTVGCPTCR 106 **********************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.6E-9 | 4 | 32 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.6E-8 | 7 | 30 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 9.1E-6 | 44 | 68 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.1E-6 | 46 | 67 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.9E-8 | 81 | 110 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 8.8E-10 | 84 | 107 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 160 aa Download sequence Send to blast |
MHSQLVCGGC KRLLQYRRGA TGVCCPTCNT FTAANPSGPE MSELVCGGCF TMLVHSRSAT 60 NIRCPHCSRL NSTRSGNQMG HLSCGQCRTT LAYPPGATTV GCPTCRNINP VRNNHTGGSA 120 RPAPSDARPQ TVLVENPKTL DEKGKLVSNV AVGVTSWKR* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.007G028700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021319999.1 | 1e-113 | protein LOL4 isoform X2 | ||||
Swissprot | Q84UR0 | 9e-72 | LOL4_ORYSJ; Protein LOL4 | ||||
TrEMBL | A0A1B6PF99 | 1e-112 | A0A1B6PF99_SORBI; Uncharacterized protein | ||||
STRING | Sb07g002500.1 | 2e-99 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20380.7 | 2e-35 | LSD family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.007G028700.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|