PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.007G015500.1.p | ||||||||
Common Name | Sb07g001400, SORBIDRAFT_07g001400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NAC | ||||||||
Protein Properties | Length: 375aa MW: 41430.7 Da PI: 9.8234 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.5 | 2.8e-49 | 45 | 170 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 +pGfrFhPt+eel+++yL+++vegk++++ e i+ vd+y+++PwdLp+ ++ ++kewyf+++rd+ky++g+r+nr+t sgyWkatg d+ Sobic.007G015500.1.p 45 MPGFRFHPTEEELIDFYLRRRVEGKRFNI-ELINLVDLYRYDPWDLPALASIGDKEWYFYVPRDRKYRNGDRPNRVTPSGYWKATGADR 132 79***************************.89***************888889************************************ PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+++ ++ +glkktLvfy g+apkg +++W+m+eyrl Sobic.007G015500.1.p 133 TVYVEVKRPIGLKKTLVFYVGKAPKGLRSSWIMNEYRL 170 *****9******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 55.012 | 44 | 190 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.1E-55 | 44 | 190 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-24 | 46 | 170 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MTQAGRRRSS STMGGASGDH HQQQQQHGGG DDGQLQQGGG GDMVMPGFRF HPTEEELIDF 60 YLRRRVEGKR FNIELINLVD LYRYDPWDLP ALASIGDKEW YFYVPRDRKY RNGDRPNRVT 120 PSGYWKATGA DRTVYVEVKR PIGLKKTLVF YVGKAPKGLR SSWIMNEYRL PSGEADRYQK 180 EISLCKVYKR PGIEDNFHLS TTTTRSSSSK AAATMEKKHH RTAASPRLAP MFDGGHSSVH 240 MNKPYSGANT TIAMTSSAAA RAATMAPQTS MFLSAPSLSS TTSTEEDGTS LYHMKGANPP 300 MLTSSTHALL NANSATMATI PIDELSRAIG SYNSQGNPNQ PLPSQGPLLP FPSMEKIWDW 360 NPLLESPKVC TSFK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-51 | 46 | 190 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-51 | 46 | 190 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-51 | 46 | 190 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-51 | 46 | 190 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-51 | 46 | 190 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-51 | 46 | 190 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.7555 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269|PubMed:17653269}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.007G015500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT060743 | 0.0 | BT060743.1 Zea mays full-length cDNA clone ZM_BFb0041P20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002443756.1 | 0.0 | NAC domain-containing protein 35 | ||||
Swissprot | Q9ZVP8 | 2e-93 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | C5YM02 | 0.0 | C5YM02_SORBI; Uncharacterized protein | ||||
STRING | Sb07g001400.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7706 | 36 | 50 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 4e-93 | NAC domain containing protein 35 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.007G015500.1.p |
Entrez Gene | 8068557 |
Publications ? help Back to Top | |||
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