PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G008500.2.p
Common NameSb07g000900, SORBIDRAFT_07g000900
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 349aa    MW: 37411.2 Da    PI: 7.051
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G008500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH292e-09208248954
                           HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            r RR+ri +++  L++l+P       +K++ a++L +A++YIk L
  Sobic.007G008500.2.p 208 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYIKFL 248
                           699*****************87.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.555199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-16204266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-15205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-14205263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-7209248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.54E-7222253No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDNITHNSSS SSSWDLDMSL GSHHHPLLFD SHHPNPGPPP PPPLPFHLSS SHPAHHHPPP  60
HPAHHHHHHP GLDPSPSSSL FPQPHHHHHH HRLHHLGLDL DPASHSHGHH RHHEFGEQQE  120
PGGGGGGGGG EEHQEEMRQQ QQHEAGGGGQ EDRGGGGAAE DVEEELGAMK EMMYRIAAMQ  180
PVDIDPATIK KPRRRNVRIS EDPQSVAARH RRERISERIR ILQRLVPGGT KMDTASMLDE  240
AIRYIKFLKR QVQELQHQPS PTQQQYPASA GAGPSTSVVG VAAPGRPGGG PPFLPLGPGP  300
LIDWAGLVRP VDIHGPTSSS SSSSMGGAHA ALGFGFSSAG GQSSHGMH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G008500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0650180.0BT065018.1 Zea mays full-length cDNA clone ZM_BFc0135I21 mRNA, complete cds.
GenBankEU9741970.0EU974197.1 Zea mays clone 442660 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444887.10.0transcription factor bHLH7
TrEMBLC5YLU60.0C5YLU6_SORBI; Uncharacterized protein
STRINGSb07g000900.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90513246
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.17e-35bHLH family protein